190 projects for "raspberry-gpio-python" with 2 filters applied:

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  • 1

    TEES

    Turku Event Extraction System

    Turku Event Extraction System (TEES) is a free and open source natural language processing system developed for the extraction of events and relations from biomedical text. It is written mostly in Python, and should work in generic Unix/Linux environments. Currently, the TEES source code repository still remains on GitHub at http://jbjorne.github.com/TEES/ where there is also a wiki with more information.
    Downloads: 0 This Week
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  • 2
    CircularLogo is a light-weighted, easy to use web application that visualizes the intra-motif dependencies of a DNA or RNA motif.
    Downloads: 0 This Week
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  • 3
    STochastic Engine for Pathway Simulation
    Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS
    Downloads: 0 This Week
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  • 4
    This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data
    Downloads: 0 This Week
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    No-Nonsense Code-to-Cloud Security for Devs | Aikido

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  • 5
    converts a SAM file to fasta file. SAM file is a file output from bwa alignment software. It outputs aligned fasta file.
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  • 6
    Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
    Downloads: 0 This Week
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  • 7
    This software has moved to http://www.poissonboltzmann.org/
    Downloads: 0 This Week
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  • 8
    Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
    Downloads: 0 This Week
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  • 9

    Moose

    Multiscale Neuroscience and Systems Biology Simulator

    Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code.
    Downloads: 0 This Week
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    Photo and Video Editing APIs and SDKs

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  • 10

    HTSeq

    Analysing high-throughput sequencing data with Python

    This SourceForge page is outdated! HTSeq has been moved to github: https://github.com/simon-anders/htseq General information and documentation on HTSeq; http://www-huber.embl.de/users/anders/HTSeq
    Downloads: 0 This Week
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  • 11
    A general-purpose individual-based forward-time population genetics simulation environment
    Downloads: 1 This Week
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  • 12
    openModeller is a complete C++ framework for species potential distribution modelling. The project also includes a graphical user interface, a web service interface and an API for Python.
    Downloads: 0 This Week
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  • 13

    ENLY

    Bioinformatic tool to improve draft genome assemblies by closing gaps

    Downloads: 0 This Week
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  • 14
    pyQPCR
    pyQPCR is a GUI application written in python that deals with quantitative PCR (QPCR) raw data. Using quantification cycle values extracted from QPCR instruments, it uses a proven and universally applicable model to give finalized quantification resu
    Downloads: 3 This Week
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  • 15
    ExSTraCS

    ExSTraCS

    Extended Supervised Tracking and Classifying System

    ... to address problems in epidemiological data mining to identify complex patterns relating predictive attributes in noisy datasets to disease phenotypes of interest. ExSTraCS combines a number of recent advancements into a single algorithmic platform. It can flexibly handle (1) discrete or continuous attributes, (2) missing data, (3) balanced or imbalanced datasets, and (4) binary or many classes. A complete users guide for ExSTraCS is included. Coded in Python 2.7.
    Downloads: 0 This Week
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  • 16
    The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
    Downloads: 8 This Week
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  • 17
    The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
    Downloads: 0 This Week
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  • 18
    StochPy
    StochPy - Stochastistic modeling in Python - is an easy-to-use package, which provides several stochastic simulation algorithms and unique analysis techniques, which can be used for stochastic simulations of biochemical systems.
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    Downloads: 13 This Week
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  • 19
    This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
    Downloads: 1 This Week
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  • 20
    Microscopy Image Processing Package
    XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
    Downloads: 0 This Week
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  • 21
    BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
    Downloads: 1 This Week
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  • 22
    Maximum Common Genome Alignment (MCGA)

    Maximum Common Genome Alignment (MCGA)

    Pipeline for creating core genome alignments for phylogenetic analysis

    Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees.
    Downloads: 0 This Week
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  • 23

    pipasic

    pipasic: Protein Abundance Correction in Metaproteomic Data

    Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise due to the high sequence similarity between related organisms. Further, the state of conservation of proteins between species can be correlated with their expression level which can lead to significant bias in results and interpretation. These challenges are similar but not identical to the challenges arising in...
    Downloads: 0 This Week
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  • 24

    fitGCP

    Fitting genome coverage distributions with mixture models

    Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for....
    Downloads: 0 This Week
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  • 25
    PyMod

    PyMod

    (OBSOLETE) PyMOL Plugin for Homology Modeling of Protein Structures

    This is the UNOFFICIAL mirror to PyMod. Since the release of PyMod2.0, this repository will no longer be maintained.
    Downloads: 2 This Week
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