Search Results for "random map generation"

BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files for visualization, and (9) support for advanced sequencing technologies such as TAB-seq, OxBS-seq, MAP-it, and NOMe-seq.

A machine learning-based method for somatic variant identification from low-pass next-generation sequencing.

A map/reduce based application for mapping short reads generated by the next-generation sequencing machines.

This program generates a random tree from an existing tree (typically a taxonomy such as Greengene) by resampling. The global topology of the new tree (number of levels, number of nodes) is preserved.

A map/reduce based application for mapping short reads generated by the next-generation sequencing machines.

The Genomic Next-generation Universal MAPper (gnumap) is a program designed to accurately map sequence data obtained from next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size.