Search Results for "json-py"

Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as...

HBAT(Hydrogen Bond Analysis Tool) is a tool to automate the analysis of hydrogen bonds present in a PDB Structure file. HBAT 2 is migrated from PERL to Python. Latest Documentation: https://hbat.abhishek-tiwari.com/ Web Server Version: http://hbat-web.abhishek-tiwari.com Latest Github Release: http://github.com/abhishektiwari/hbat Citation: Tiwari, A., & Panigrahi, S. K. (2007). HBAT: A Complete Package for Analysing Strong and Weak Hydrogen Bonds in Macromolecular Crystal...

Visor for mass spectrometry JSON files generated by the Integrator program (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/jsonvisor3/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining.

Want to convert an MGF file to JSON format? This is the app for you, especially if you want to use the JSON file in the FOR-IDENT search program. If you don't know what MGF file, JSON format, FOR-IDENT search program is then this isn't the app for you. Happy conversion!

pyMantis is a data-management system for (systems) biology build on the web2py framework. It features: tree based file explorer, relational db table wizzard with automated creation of user interfaces, internal and external access management, wiki, ..

Memomics Forge is a meta-project for software that utilizes the Memomics Semantic Service. Memomics Semantic Service provides semantic data which can be embedded in applications via webservices.

...From any supported identifier - DOI, PMID, PMCID, ISBN, arXiv ID, ISSN, NASA ADS bibcode, or WHO IRIS URL - it can: - resolveIdentifier - return structured bibliographic metadata (CSL JSON) - formatCitation - format into 10,000+ CSL styles (Vancouver, APA, AMA, IEEE, CSE, or any CSL style ID) - exportCitation - export to BibTeX, RIS, CSL JSON, EndNote, RefWorks, MEDLINE, Zotero RDF, CSV, or plain text - checkRetraction - surface retractions, corrections, and expressions of concern (Crossref / Retraction Watch) - checkOpenAccess - report OA status and the best legal landing/PDF URL (Unpaywall) - verifyCitation - cross-check a claimed citation against the record at its identifier, detecting the AI-driven "real DOI + invented title" fabrication pattern that simple resolution cannot catch MIT licensed; source on GitHub.

...Give it any supported identifier - DOI, PMID, PMCID, ISBN, arXiv ID, ISSN, NASA ADS bibcode, or WHO IRIS URL - and: - Format citations in 10,000+ CSL styles (Vancouver, APA, AMA, IEEE, CSE, and any CSL style ID) - Export bibliographies to BibTeX, RIS, CSL JSON, EndNote, RefWorks, MEDLINE, Zotero RDF, CSV, or plain text - Check retraction status (retractions, corrections, expressions of concern; Crossref / Retraction Watch) - Check open access status and the best legal copy (Unpaywall) - Verify that a claimed citation actually matches the paper at its identifier — catching the AI-driven "real DOI + invented title" fabrication pattern No API key is required for the free, rate-limited tier - npm install -g scholar-sidekick-cli (or npx) and go. ...