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...After optimization, MAMA accurately simulated more than 87% of gene expression.
See Kakei Y, Ogo Y, Itai RN, et al. (2013) Development of a novel prediction method of cis-elements to hypothesize collaborative functions of cis-element pairs in iron-deficient. Rice 6(1): 22.
parFE is fully-parallel high-performance finiteelement code targeted to the modeling of trabecular bones in humans. It employs scalable multigrid solvers for efficient solutions on massively parallel computers.
FieldML consists of a serialisation format and an API and an implementation of the API. It focuses on representing finiteelement meshes, and fields on meshes. Based on the already successful format used by CMISS (www.cmiss.org)