Showing 17 open source projects for "capture"

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  • 1
    Downloads: 0 This Week
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  • 2

    MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. ...
    Downloads: 0 This Week
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  • 3
    PALM

    PALM

    Probabilistic natural mapping for gene based association study.

    PALM is a software that conducts gene-based association analysis. PALM exploits Hidden Markov Models (HMM) to capture the inner genomic structures. Then, unique gene features (termed "palm prints") are extracted for each gene set by calculating the natural gradient. Then palm-prints are tested with chi-square significance test.
    Downloads: 0 This Week
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  • 4
    Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
    Downloads: 4 This Week
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  • 5
    Atlas2
    Atlas is a suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequecing (WECS) data.
    Downloads: 3 This Week
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  • 6

    Ontology of Microbial Phenotypes (OMP)

    Ontology for annotating phenotypes of microbes for genetic research

    ...Characterization of phenotypes resulting from genetic manipulation is an important means of determining protein function. The Ontology of Microbial Phenotypes (OMP) is a controlled vocabulary that allows researchers to standardize the capture of phenotypic information to facilitate such research.
    Downloads: 0 This Week
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  • 7

    Pathosphere

    Code supporting Pathosphere.org

    ...Create an analytical environment that will enable the use of collaborators' software from anywhere, but ensure the security of analytical capabilities and data. Establish a common web front end that will capture a dynamic and changing set of analytical features. Allow users to work with the best tools without expending energy to gain access to them.
    Downloads: 0 This Week
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  • 8

    BiomeNet

    BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES

    ...The basic idea is that the mixture components of the model (metabolic reactions, subnetworks, and networks) are shared across all groups (microbiome samples), but the mixture proportions vary from group to group. Through this framework, the model can capture nested structures within the data. BiomeNet is unique in modeling each metagenome sample as a mixture of complex metabolic systems (metabosystems).
    Downloads: 0 This Week
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  • 9
    SeqSelector

    SeqSelector

    Tools to select sequences for capture enrichment of next-gen libraries

    ...These sequences are used as a query during a BLAST search of the unannotated genome of a non-model species, and then the corresponding sequences are returned, which can be used to design baits for hybridization-based sequence capture.
    Downloads: 0 This Week
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  • 10
    Used to record and analyze some behavioural experiments in neuroscience (using usb webcam). it was developed in collaboration with neuropharmacology lab at Faculty of Medicine, Ain Shams University. it can use(JMF,OpenCV,JMyron & AGCamLib) for webcam
    Downloads: 0 This Week
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  • 11
    CoNIFER

    CoNIFER

    Homepage for CoNIFER (Copy Number Inference From Exome Reads)

    CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.
    Downloads: 2 This Week
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  • 12
    MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & capture to movie file with MASyVs GUI & message passing lib. Includes examples: Hello World, ants, viral infection
    Downloads: 0 This Week
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  • 13
    OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.
    Downloads: 0 This Week
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  • 14
    Order Switchable Column Table (OSCT) is a framework of tab-delmited format in molecular biology. OSCT, developed in RIKEN OSC, provide a general framework to capture meta-data (such as input file, protocol, parameters, etc) as well as the data itself.
    Downloads: 0 This Week
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  • 15
    Web-based Electronic Data Capture (EDC) software for clinical trials. Uses XML-based data store based on CDISC ODM standard for clinical data interchange.
    Downloads: 0 This Week
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  • 16
    PACLIMS (Phenotype Assay and Characterization Laboratory Information Management System) is a web-based, open source software system for tracking and data capture from high throughput mutational screens. Click on the Home Page Link above for test DB
    Downloads: 0 This Week
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  • 17
    Mars Eva Computing Environment is a JMF, JINI project that is used to provide a collaborative mission planning & execution environment for furture teams on Mars. This effort is part of a simulation for the Mars Society of Australia.
    Downloads: 0 This Week
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