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EcoloSim is a Simulation Framework for simple spatial models in biology and ecology, in Java.
Typical problems are behavior of a herd of cattle, growth of microbe cells and other populations.
An Evolution Simulator of Single Cells in a Pond. This shows a crosssection of
water with sun shining from above. A single cell is dropped in and has various genes. The cells multipy and evolve. See Files above for download and screenshot.
STARS is an alternative interface to staden for studying polymorphisms in short sequences with batch processing, manual editing, trace viewing and data management. STARS was initially designed for Multi Locus Sequence Typing of bacteria.
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froi (FS-FAST ROI) is a suite of Perl scripts and modules to provide easy slice-, volume-, and surface-based ROI analysis of functional MRI (fMRI) data analyzed by FS-FAST and Freesurfer (http://surfer.nmr.mgh.harvard.edu).
An application for modelling species distribution and preparing and retrieving locality,climatic and other data for use in species distribution models.
Ce projet couvre tous les développements logiciels qu'Unitec, le club de robotique de l'UTBM, va entreprendre pour la coupe de France de robotique E=M6.
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iMate is a win32 / Linux desktop mate programme. It offers more features than the already existing desktop mate (AI, learning capacity, growth and limited lifeTime, third party tools to add new behaviour, ...).
GenomePixelizer is a program for comparative genomics, detection of duplication events in genomes, tracking the "footprints" of evolution. It may be considered as a drawing tool that generates custom images of genomes out of the given set of genes.
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a drawing tool that generates custom graphs for the given set of elements.
Alife research platform to study the evolvability of different assembly-like computer languages. It's similar to Tierra and Avida but it's designed to be more general.
GUI based application dedicated to researchers of time series data
in various areas. Features: realtime modification and visualization
of data records, redlining, independent scaling in x/y.
jrgp is a strong-typed Genetic Programming system, which features a graphical interface (gool) to setup and run GP-problems and a tool (fs-d) that greatly simplifies the definition of a GP-problem.
Two Dimensional NOesy simulation (TDN) implementents an algorithm that creates a time-domain 2D NOesy spectrum. TDN does not calculated the nOe peak intensities, Therefore, you will need the CORMA (Complete nuclear Overhauser Relaxation Matrices).
ĄHola!, for "Hordes of Little Atoms," is a project to develop a lean,
modular, scalable toolkit for massive simulations of particle
(molecular) dynamics. It is written in C and Python to get the best
balance between programmer and run time.
Le projet eflore, porte par l'association tela-botanica
(http://www.tela-botanica.org), a pour but d'etablir les structures
d'informations necessaires ŕ l'etablissement d'une flore electronique
et de developper les outils informatiques les exploitant.
Info Sapient will be an Open Source, Common License 0.5, 100% Pure Java based program that is a mechanism for the expression and execution of business rules.
Featurama, superceding ProbePicker, is a bioinformatics program used to generate short probes from large datasets for use in DNA microarray experiments. A new project, BioSap, will extend the functionality of featurama.
The goal of the GeneJock Project is to produce an Open Source DNA sequence editor that is cross-platform, full featured and extensible. A second goal (which may become more important), is the development of a C++ library for biological data manipulation.
http://www.princeton.edu:80/pr/pwb/01/0326/1b.shtml
http://www.cs.princeton.edu/immsim/
Immsim is an immune system simulation used by Immunology students and researchers. Currently it is being used at Princeton University.
Cooperative effort to develop a Java-XML API and architecture to manage and share health concepts and processes eficiently. Includes a framework to develop healthcare applications (from PDA reminders to hospital information systems) quickly and easily.
This package is intended to control dilutions of proteins / lipids / detergents mixtures in a reproducible, easy and even fun way in order to produce protein cristals.