Showing 382 open source projects for "java swing application"

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  • 1
    FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
    Downloads: 1 This Week
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  • 2
    coalescent

    coalescent

    Software tool for Research in Computational Population Genetics

    Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT
    Downloads: 0 This Week
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  • 3
    cy2fluxviz

    cy2fluxviz

    cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization

    cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks. Latest releases from https://github.com/matthiaskoenig/cy2fluxviz
    Downloads: 0 This Week
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  • 4
    Acacia
    Error-corrector for pyrosequenced amplicon reads.
    Downloads: 0 This Week
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  • 5
    AutoMATRIX is a tool to predict key transcription factors in microarray experiments.
    Downloads: 0 This Week
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  • 6
    The objective of this project is to make available an open-source version of our Multifactor Dimensionality Reduction (MDR) software. MDR is a nonparametric alternative to logistic regression for detecting and characterizing nonlinear interactions.
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    Downloads: 4 This Week
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  • 7
    Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
    Downloads: 2 This Week
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  • 8
    Topiary Explorer
    TopiaryExplorer has moved to GitHub. Find the new project info page here: https://github.com/qiime/Topiary-Explorer. If you need help or would like to add a bug/feature request, please do so there.
    Downloads: 0 This Week
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  • 9

    Cylindrical BLAST Viewer

    Alignments in Rotating Cylinder / 3D

    3D viewer which arranges BLAST hits and other bioinformatics-related alignments in a rotating, cylindrical display. Feedback appreciated. NOTE: requires Java3d installation. Superceded by Cylindrical Alignment App
    Downloads: 0 This Week
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  • 10
    SecStAnT

    SecStAnT

    Secondary Structure Analysis Tool for data selection and statistics

    SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions. SecStAnT is able to 1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives. 2. Build Data-sets at different levels of resolution (all atoms, only backbone, only...
    Downloads: 0 This Week
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  • 11
    The goal of this project is to combine different sources of information as well as methods to help in the process of gap closing / genome finishing in high throughput sequencing.
    Downloads: 6 This Week
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  • 12

    MatrixMaker

    Custom substitution matrix creator

    Create custom substitution matrices for BLAST protein search. Easy to use GUI based application.
    Downloads: 0 This Week
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  • 13

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
    Downloads: 0 This Week
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  • 14
    Parallel Iterative Deconvolution is a multithreaded ImageJ plugin for iterative image deblurring.
    Downloads: 19 This Week
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  • 15
    Parallel Spectral Deconvolution is a multithreaded ImageJ plugin for spectral image deblurring.
    Downloads: 4 This Week
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  • 16

    ViSEN

    Visualization tool for statistical epistasis networks

    The objective of this project is to provide a graphical visualization for statistical epistasis.  Pairwise and three-way epistatic interactions are measured using information gain and are represented using networks.
    Downloads: 0 This Week
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  • 17
    Parallel HRRT Deconvolution is a multithreaded ImageJ plugin for motion correction of PET brain images.
    Downloads: 0 This Week
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  • 18

    locusvu

    Tool for genomics;automates data retrieval from db;enables workflows

    LocusVu is a novel Java based software tool that accepts a list of genomic loci (positions on the chromosome) as input and automates fetching of related information (cytogenetic band, gene name, OMIM data etc.) from public databases such as the UCSC genome browser database. It then enables multiple workflows on the retrieved results, like comparing multiple datasets (comparative genomics), viewing neighboring genes for a loci from within the tool itself, or graphically representing these...
    Downloads: 0 This Week
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  • 19

    Face Recognition Based Login Assistant

    Login to Websites Automatically Using Your Face as Password

    Face detection can be regarded as a more general case of face localization. In face localization, the task is to find the locations and sizes of a known number of faces (usually one). In face detection, one does not have this additional information. Face detection is mostly used along with facial recognition feature to extract faces out of an image or video feed and identify the faces against a set of stored images. This feature can be used for tracking prisoners, attendance and signing in...
    Downloads: 0 This Week
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  • 20

    BioDare

    BioDare is Biological Data Repository focused on timeseries data

    BioDare (Biological Data Repository) was developed under the multi-site ROBuST project (http://hallidaylab.bio.ed.ac.uk/ROBuST.html) to support data exchange inside the project. It is a web application which allows data-sharing (including public dissemination), data-processing and analysis, with the main focus on time-series data produced in circadian experiments. The main features of BioDare are: - an online repository for experimental data accompanied by extensive...
    Downloads: 0 This Week
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  • 21
    A lightweight and scalable genome browser
    Downloads: 0 This Week
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  • 22
    genomemap
    A software framework to build maps for Neurospora crassa genome based on probabilistic models of meiotic recombination. A netbeans platform application is built to incorporate the computations. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/GENOMEMAP
    Downloads: 0 This Week
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  • 23
    ADOPS

    ADOPS

    Automatic Detection Of Positively Selected Sites

    ADOPS is a bioinformatics tool that automatizes the detection of positively selected sites given a set of unaligned nucleotide sequence data. ADOPS implements a complete workflow that integrates three well-known bioinformatic tools: T-Coffee, MrBayes and Codeml (PAML).
    Downloads: 0 This Week
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  • 24

    Fylogenetica

    Constructing level-1-networks consistent with a set of quartets

    This project is an implementation of an algorithm by J. Keijsper and R. Pendavingh. The goal of the algorithm is to construct a phylogenetic level-1-network that is consistent with a given set of quartets.
    Downloads: 0 This Week
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  • 25
    CytoCopteR

    CytoCopteR

    A Cytoscape plug-in for training logic models, based on CellNOptR.

    Homepage: www.cellnopt.org Based on prior knowledge networks CellNOptR can derive functional information about the network using logic modeling. CytoCopteR is a friendly way to use CellNOptR taking advantage of the network visualization and analysis of Cytoscape and without requiring knowledge on R.
    Downloads: 0 This Week
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