Search Results for "bio-bwa-files"
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Showing 33 open source projects for "bio-bwa-files"
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HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
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SKUDONET ADC, operates at the application layer, efficiently distributing network load and application load across multiple servers. This not only enhances the performance of your application but also ensures that your web servers can handle more traffic seamlessly.
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Cisco SSH/SNMP Config Tool
Allows you to deploy configuration updates to your Cisco devices
Easy to use tools for a network administrator with a lot of Cisco routers or switches to manage. The SSH tool can also deploy commands to any SSH device, but the SNMP tool works only with Cisco devices Last version of SSH Tool https://sourceforge.net/projects/cisco-ssh-snmp-config-tool/files/SSH%20Config%20Tool/Cisco%20SSH%20Config%20Tool%20v1.2.2.zip/download Last version of SNMP Tool https://sourceforge.net/projects/cisco-ssh-snmp-config-tool/files/SNMP%20Config%20Tool/Cisco%20SNMP... -
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Cisco config sanitizer tool
Tool used to sanitize Cisco configuration files.
Cisco sanitizing configuration tool. It removes passwords, keys, certs and other sensitive data from text config files. Use this tool to sanitize extracted configurations files before you send them to audit (Ex: TAC) 'show tech-support' is good, but sometimes you need to remove more sensitive data from the configurations This tool will scan a folder with all its sub-folders and sanitize every file from that tree. But it will never modify the source files, instead it will create another... -
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Dodger-Tools
BASH tools and and Debian packages for Linux users and administrators
The Dodger-Tools are a constantly growing collection of BASH tools and Debian packages for Linux users and administrators. -
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Tranalyzer
Tranalyzer flow generator packet analyzer moved to: tranalyzer.com
The Anteater moves to a new site, available under tranalyzer.com. This tool generates extended netflow-like flow/packet statistics from large pcap files or ethernet interfaces. It is intended to serve as a tool for IT troubleshooting, encrypted traffic mining, AI preprocessing and forensic analysis. A packet based "tshark mode" for detailed header and content inspection is improved for troubleshooting and security purposes. Flow based and packet based content inspection and extraction, better... -
Our computer monitoring software allows employees, field contractors, and freelancers to manually clock in when they begin working on an assignment. The application will take screenshots randomly or at set intervals, which allows employers to observe the work process. The application only tracks activity when the employee is clocked in. No spying, only transparency.
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Wings for NONMEM (wfn) is a set of DOS batch files and awk scripts to make the use of NONMEM more convenient. Simpler NONMEM execution: nmgo runname Extended control stream with user defined names for THETA(), etc. Automatic structured output ...
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fields.awk
A flat-file database program written in bash shell and awk scripts.
Fields.awk allows users to create and work with small-to-medium databases on their home computers or a mobile device with bash shell terminal emulator. It runs on any OS compatible with bash shell, including Linux, FreeBSD, MacOSX, and Android. Certain optional features (printing/encryption) are dependent on external utilities such as lp or ccrypt. -
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PlayShell
A console-based media player frontend
PlayShell is a simple console-based application for playing media files in Linux using known media players like SoX, VLC, MPlayer and FFplay as backend. -
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Elevations moves data from Excel to Unix systems. It connects VBA with Cygwin SSH, CGI and HTTP POST to deliver to a QuantLib C++ server through pipes. Provides C++ classes to process CSV files and the strings to C++ types. File schema definitions.
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Log Monitoring - Monitor/Check Log Files
Log File Monitoring - Check Log Files, Analyze, Alert on any UNIX Log
Monitoring log files is mandatory in all UNIX environments. LoGrobot does this for you efficiently. It analyzes, graphs and alerts on system log files, application log files, database log files, custom log files...basically any log file. Benefits: Automatically scans log files for errors or user specified patterns Shows the offending log entries in the alerts generated on a monitored log file Shows latest size of a log file at the time of the most recent log check Shows total entries... -
Collaborate is customizable case management software for non-profits and social services agencies with teams of 5+ staff.
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debguy scripts
a variety of useful scripts w/no sf page
A list of scripts and synopis are visible on Files page. (README.debguyscripts) The following are all inside Totally Built Linux "boot RC" tarball, possibly lightly updated. (and software like is in tbld's sources-src2-additional.tar) emkfontdirs ; extended mkfontdir , does allot for you emkfontdir doesn't (warning: not for novices). fix_fonts runs emkfontdirs with options (-D -L are usefile w/xorg) man-tty-bland ; cat manpage ascii (no hidden special chars like -P cat) MAKEDEV... -
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Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files... -
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exd
A command line tool to manage bytes in hex dumps or packet captures
Command-line tool to examine or edit bytes in hex, octal, binary, or in packet capture (pcap) dumps. Exd is intended to be used in conjunction with hex dump tools such as xxd, od, hexdump, or hd, and with packet capture dump tools such as tshark and text2pcap. --- metadata tags byte hex octal binary pcap packet packet dump hexdump -
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memesa-tools
A collection of tools used in the enumeration of solution spaces
This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function. -
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mp3 library, advanced ID3V1 and ID3V2 tagger, player. Organize a large mp3 library, over 40,000 songs. Speech synthesis and tag backup utilities. Scripts to maintain and organize song files.
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ExonFinder
A pipeline to extract novel cassette exons/retained-introns
ExonFinder provides a pipeline to extract novel cassette exons and novel retained-introns from the results of mapping cross-species ESTs against a target genome via blat. -
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NIKS
NIKS (Needle in a K-stack) - detection of mutations in NGS data
To get access to the code, please check it out with svn as described in the code section. -
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SOAPsv
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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Win32 Locate and Updatedb Scripts
Easy way to search files and folders
Like the Linux "locate" and "updatedb", "winlocate" is a very simple solution for finding files and folders in a windows environment system. All is done by using 2 scripts (.BAT), some GNU tools and Sqlite3. I hope you will enjoy this release. -
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AllCheckSumer
Calculate and compare files with 3 different file signature algorithms
AllCheckSumer is a handy tool for computer forensics and is helpful for investigators to search throughout a computer’s file system for a bad hash specified by the investigator. The tool will search throughout a location, specified by the investigator. It can be either an entire file system or a specific folder, and create a hash set with the following file signature algorithms: • MD5 (Message-Digest Algorithm v. 5) • SHA-1 (Secure Hash Algorithm v. 1) • CRC (Cyclic Redundancy Check) -
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WebBuild is a collection of scripts for Cygwin or UNIX shells, using awk and sed, to develop HTML pages in an easy way, having a template and source files containing the content to publish.
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An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be dynamically extended to use proprietary ODBC API driver in many easy ways. It is bundled with scripts to ge