Search Results for "simulation tools peptide"
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Showing 21 open source projects for "simulation tools peptide"
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FLEXible
Federated Learning (FL) experiment simulation in Python
FLEXible (Federated Learning Experiments) is a Python framework offering tools to simulate FL with deep learning. It includes built-in datasets (MNIST, CIFAR10, Shakespeare), supports TensorFlow/PyTorch, and has extensions for adversarial attacks, anomaly detection, and decision trees. -
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Humanoid-Gym
Reinforcement Learning for Humanoid Robot with Zero-Shot Sim2Real
Humanoid-Gym is a reinforcement learning framework designed to train locomotion and control policies for humanoid robots using high-performance simulation environments. The system is built on top of NVIDIA Isaac Gym, which allows large-scale parallel simulation of robotic environments directly on GPU hardware. Its primary goal is to enable efficient training of humanoid robots in simulation while enabling policies to transfer effectively to real-world hardware without additional training.... -
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PentestAgent
AI agent framework for black-box security testing
PentestAgent is an open-source autonomous security testing platform designed to help organizations identify vulnerabilities and assess security posture by simulating real-world attack scenarios without manual intervention. It brings a modular and automated approach to penetration testing by orchestrating a suite of tools and scripts that can emulate common exploitation techniques, reconnaissance workflows, and post-exploitation activities across targets. Users configure rules, policies, and... -
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LingBot-VLA
A Pragmatic VLA Foundation Model
...The model aims to bridge vision, language understanding, and motor control within one unified architecture, making it capable of understanding high-level instructions and generating coherent low-level actions in physical environments. Because LingBot-VLA includes not just the model weights but also a full production-ready codebase with tools for data handling, training, and evaluation, developers can adapt it to custom robots or simulation environments efficiently. -
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FISSURE
The RF and reverse engineering framework for everyone
FISSURE is an open-source radio frequency analysis and signal intelligence framework built to support software-defined radio research, wireless security experimentation, and protocol reverse engineering. The project brings together tools for capturing, inspecting, decoding, replaying, and analyzing RF signals across a wide range of wireless technologies. It is designed as a practical environment for researchers and operators who need to move from raw spectrum observation to structured investigation without stitching together too many separate utilities by hand. The platform supports workflows related to signal discovery, demodulation, packet inspection, fuzzing, and attack simulation, making it useful for both defensive research and controlled lab testing. ... -
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BioNeMo
BioNeMo Framework: For building and adapting AI models
BioNeMo is an AI-powered framework developed by NVIDIA for protein and molecular generation using deep learning models. It provides researchers and developers with tools to design, analyze, and optimize biological molecules, aiding in drug discovery and synthetic biology applications. -
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TensorFlow Quantum
Open-source Python framework for hybrid quantum-classical ml learning
TensorFlow Quantum is an open-source software framework designed for building and training hybrid quantum-classical machine learning models within the TensorFlow ecosystem. The framework enables researchers and developers to represent quantum circuits as data and integrate them directly into machine learning workflows. By combining classical deep learning techniques with quantum algorithms, the platform allows experimentation with quantum machine learning methods that may offer advantages... -
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Diffrax
Numerical differential equation solvers in JAX
...This makes it especially appealing for researchers who need equation solvers that can be embedded inside trainable models or simulation-heavy learning systems. -
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VectorizedMultiAgentSimulator (VMAS)
VMAS is a vectorized differentiable simulator
VectorizedMultiAgentSimulator is a high-performance, vectorized simulator for multi-agent systems, focusing on large-scale agent interactions in shared environments. It is designed for research in multi-agent reinforcement learning, robotics, and autonomous systems where thousands of agents need to be simulated efficiently. -
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TorchIO
Medical imaging toolkit for deep learning
...It includes multiple intensity and spatial transforms for data augmentation and preprocessing. These transforms include typical computer vision operations such as random affine transformations and also domain-specific ones such as simulation of intensity artifacts due to MRI magnetic field inhomogeneity (bias) or k-space motion artifacts. TorchIO is a Python package containing a set of tools to efficiently read, preprocess, sample, augment, and write 3D medical images in deep learning applications written in PyTorch, including intensity and spatial transforms for data augmentation and preprocessing. ... -
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RWARE
MuA multi-agent reinforcement learning environment
robotic-warehouse is a simulation environment and framework for robotic warehouse automation, enabling research and development of AI and robotic agents to manage warehouse logistics, such as item picking and transport. -
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AICGSecEval
A.S.E (AICGSecEval) is a repository-level AI-generated code security
AICGSecEval is an open-source benchmark framework designed to evaluate the security of code generated by artificial intelligence systems. The project was developed to address concerns that AI-assisted programming tools may produce insecure code containing vulnerabilities such as injection flaws or unsafe logic. The framework constructs evaluation tasks based on real-world software repositories and known vulnerability cases derived from CVE records. By simulating realistic development... -
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Meta Agents Research Environments (ARE)
Meta Agents Research Environments is a comprehensive platform
Meta Agents Research Environments (ARE) is a simulation and benchmarking platform. It is designed to evaluate AI agents in dynamic, evolving, multi-step tasks. Unlike static benchmarks, ARE supports environments where agents must adapt to changes over time and reason over sequences of actions. It interacts with applications and faces uncertainty. The included Gaia2 benchmark offers 800 scenarios across multiple “universes”. It can test reasoning, memory, tool use, and adaptability.... -
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SpikingJelly
SpikingJelly is an open-source deep learning framework
SpikingJelly is an open-source deep learning framework for spiking neural networks that is primarily built on top of PyTorch and aimed at neuromorphic computing research. The project provides the components needed to build, train, and evaluate neural models that communicate through discrete spikes rather than the continuous activations used in conventional artificial neural networks. This makes it especially relevant for researchers interested in biologically inspired computing, event-driven... -
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DriveLM
Driving with Graph Visual Question Answering
DriveLM is a research-oriented framework and dataset designed to explore how vision-language models can be integrated into autonomous driving systems. The project introduces a new paradigm called graph visual question answering that structures reasoning about driving scenes through interconnected tasks such as perception, prediction, planning, and motion control. Instead of treating autonomous driving as a purely sensor-driven pipeline, DriveLM frames it as a reasoning problem where models... -
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Diffusion for World Modeling
Learning agent trained in a diffusion world model
Diffusion for World Modeling is an experimental reinforcement learning system that trains intelligent agents inside a simulated environment generated by a diffusion-based world model. The project introduces the idea of using diffusion models, commonly used for image generation, to simulate the dynamics of an environment and predict future states based on previous observations and actions. Instead of interacting directly with a real environment, the reinforcement learning agent learns within... -
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Automated Interpretability
Code for Language models can explain neurons in language models paper
The automated-interpretability repository implements tools and pipelines for automatically generating, simulating, and scoring explanations of neuron (or latent feature) behavior in neural networks. Instead of relying purely on manual, ad hoc interpretability probing, this repo aims to scale interpretability by using algorithmic methods that produce candidate explanations and assess their quality. It includes a “neuron explainer” component that, given a target neuron or latent feature,... -
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GNNPCSAFT Chat
Chatbot with GNNPCSAFT
The GNNPCSAFT Chat is an implementation of our project that focuses on using Graph Neural Networks (GNN) to estimate the pure-component parameters of the Equation of State PC-SAFT. We developed this app so the scientific community can access the model's results easily. In this app, you can chat with LLM models (Gemini or Ollama) with GNNPCSAFT tools, allowing you to ask questions about the PC-SAFT parameters of various compounds, predict thermodynamic properties, and get insights into the... -
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AEA Framework
A framework for autonomous economic agent (AEA) development
agents-aea by Fetch.ai is a framework for building autonomous economic agents (AEAs) that can act independently, communicate, and transact on decentralized networks. It focuses on enabling AI-driven agents to participate in digital marketplaces and ecosystems. -
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MuJoCo-py
mujoco-py allows using MuJoCo from Python 3
...The library is compatible with MuJoCo version 2.1 and supports Linux and macOS, while Windows support has been deprecated. It provides utilities for loading models, running simulations, and accessing simulation states in real time, along with visualization tools for rendering environments. The project also includes interactive examples showcasing collision handling, texture randomization, state resetting, and robot control. By bridging MuJoCo with Python, mujoco-py enables rapid prototyping, training, and evaluation of AI agents in physics-rich environments. -
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MAF (Mobile Agent Framework) is a research prototype which aims to facilitate the development and evaluation of mobile agent by providing a set of handy primitatives and simulation tools.
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