Search Results for "scientific"
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Showing 214 open source projects for "scientific"
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Scientific Agent Skills
A set of ready to use Agent Skills for research, science, engineering
Scientific Agent Skills is an open-source collection of ready-to-use agent skills designed to turn AI coding assistants into stronger research, science, engineering, and analysis partners. It supports any AI agent compatible with the Agent Skills standard, including tools such as Cursor, Claude Code, Codex, and Gemini CLI. The repository includes 135 skills across scientific domains such as genomics, cheminformatics, clinical research, medical imaging, machine learning, physics, materials science, geospatial analysis, and scientific writing. ... -
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Claude Scientific Skills
A set of ready to use Agent Skills for research, science, engineering
Claude Scientific Skills is a large open source collection of ready-to-use scientific capabilities that extend AI coding agents into full research assistants. The project provides more than 170 curated skills covering domains such as genomics, drug discovery, medical imaging, physics, and advanced data analysis. Each skill bundles documentation, examples, and tool integrations so agents can reliably execute complex multi-step scientific workflows. -
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MathCode
A Frontier Mathematical Coding Agent
MathCode is a terminal-based AI coding assistant focused on mathematical formalization and theorem proving. It is designed to transform plain-language mathematical reasoning into verified Lean 4 code and formal proofs. The project combines AI agents with Lean Language Server Protocol integration, allowing it to inspect compiler feedback, search for lemmas, and iteratively repair failed proof attempts. It supports an agentic proving workflow where the system behaves more like an interactive... -
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SciSpaCy
A full spaCy pipeline and models for scientific/biomedical documents
ScispaCy is a spaCy extension optimized for processing biomedical and scientific text, providing domain-specific NLP models for tasks like named entity recognition (NER) and dependency parsing. -
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The AI Scientist-v2
Workshop-Level Automated Scientific Discovery via Agentic Tree Search
AI-Scientist-v2 is an advanced autonomous research system designed to perform end-to-end scientific discovery using large language models and agent-based orchestration. The platform is capable of generating original research ideas, designing and executing experiments, analyzing and visualizing results, and producing full academic papers without direct human intervention. It introduces a generalized framework that removes reliance on predefined templates, enabling broader applicability across multiple machine learning domains and more open-ended exploration of research problems. ... -
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robosuite
A Modular Simulation Framework and Benchmark for Robot Learning
Robosuite is a modular and extensible simulation framework for robotic manipulation tasks, built on top of MuJoCo. Developed by the ARISE Initiative, Robosuite offers a set of standardized benchmarks and customizable environments designed to advance research in robotic manipulation, control, and imitation learning. It emphasizes realistic simulations and ease of use for both single-task and multi-task learning. -
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Get Physics Done (GPD)
The first open-source agentic AI physicist
Get Physics Done (GPD) is an open-source project designed to accelerate scientific research in physics by leveraging modern computational tools and automation techniques. It aims to simplify the process of performing simulations, calculations, and experimental analysis by providing structured workflows that integrate computational physics methods with reproducible research practices. The project focuses on reducing the friction involved in setting up experiments, running simulations, and analyzing results, allowing researchers to focus more on scientific insight rather than infrastructure. ... -
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NVIDIA PhysicsNeMo
Open-source deep-learning framework for building and training
NVIDIA PhysicsNeMo is an open-source deep learning framework designed for building artificial intelligence models that incorporate physical laws and scientific knowledge into machine learning workflows. The framework focuses on the emerging field of physics-informed machine learning, where neural networks are used alongside physical equations to model complex scientific systems. PhysicsNeMo provides modular Python components that allow developers to create scalable training and inference pipelines for models that combine data-driven learning with physics-based constraints. ... -
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Brax
Massively parallel rigidbody physics simulation
Brax is a fast and fully differentiable physics engine for large-scale rigid body simulations, built on JAX. It is designed for research in reinforcement learning and robotics, enabling efficient simulations and gradient-based optimization. -
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Surya
Implementation of the Surya Foundation Model for Heliophysics
Surya is an open‑source, AI‑based foundation model for heliophysics developed collaboratively by NASA (via the IMPACT AI team) and IBM. Named after the Sanskrit word for “sun,” Surya is trained on nine years of high‑resolution solar imagery from NASA’s Solar Dynamics Observatory (SDO). It is designed to forecast solar phenomena—such as flares, solar wind, irradiance, and active region behavior—by predicting future solar images with a sophisticated long–short vision transformer architecture,... -
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BioNeMo
BioNeMo Framework: For building and adapting AI models
BioNeMo is an AI-powered framework developed by NVIDIA for protein and molecular generation using deep learning models. It provides researchers and developers with tools to design, analyze, and optimize biological molecules, aiding in drug discovery and synthetic biology applications. -
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PaperAI
Semantic search and workflows for medical/scientific papers
PaperAI is an open-source framework for searching and analyzing scientific papers, particularly useful for researchers looking to extract insights from large-scale document collections. -
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PyTensor
Python library for defining and optimizing mathematical expressions
PyTensor is a fork of Aesara, a Python library for defining, optimizing, and efficiently evaluating mathematical expressions involving multi-dimensional arrays. PyTensor is based on Theano, which has been powering large-scale computationally intensive scientific investigations since 2007. A hackable, pure-Python codebase. Extensible graph framework is suitable for rapid development of custom operators and symbolic optimizations. Implements an extensible graph transpilation framework that currently provides compilation via C, JAX, and Numba. Based on one of the most widely-used Python tensor libraries: Theano. -
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Biomni
Biomni: a general-purpose biomedical AI agent
Biomni is a general-purpose biomedical AI agent designed to autonomously perform complex research tasks across a wide range of scientific domains, combining language model reasoning with structured planning and execution. It integrates retrieval-augmented generation with code-based execution, allowing it to access external knowledge, process data, and generate testable hypotheses in scientific workflows. The system is built to support researchers by automating repetitive and time-consuming tasks such as literature review, data analysis, and experimental design. ... -
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Violin
Open-source Video Translation Skill
Violin is an open-source video translation and dubbing tool that turns existing videos into localized versions with translated voice-over and optional subtitles. It transcribes the original speech, translates the text, generates natural-sounding speech in the target language, and remuxes the new audio back into the video. The project is designed to keep the generated speech aligned with the original timing so the final result feels closer to a real dubbed video. It can be used from the... -
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Evo 2
Genome modeling and design across all domains of life
Evo 2 is a DNA language model system designed for long-context genome modeling and biological sequence design across all domains of life. The project models DNA at single-nucleotide resolution and supports context windows of up to one million base pairs, which places it in a class of models built for very large genomic reasoning tasks. According to the repository, it uses the StripedHyena 2 architecture, was pretrained with Savanna, and was trained autoregressively on the OpenGenome2 dataset... -
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Protenix
A trainable PyTorch reproduction of AlphaFold 3
Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as... -
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DeepXDE
A library for scientific machine learning & physics-informed learning
DeepXDE is a library for scientific machine learning and physics-informed learning. DeepXDE includes the following algorithms. Physics-informed neural network (PINN). Solving different problems. Solving forward/inverse ordinary/partial differential equations (ODEs/PDEs) [SIAM Rev.] Solving forward/inverse integro-differential equations (IDEs) [SIAM Rev.] fPINN: solving forward/inverse fractional PDEs (fPDEs) [SIAM J. -
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MedgeClaw
Open-source AI research assistant for biomedicine
...MedgeClaw also supports reproducibility by generating structured reports and maintaining consistent environments through containerization. Its architecture combines conversational AI, automated pipelines, and scientific tooling into a unified workflow. -
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Karpathy
An agentic Machine Learning Engineer
...Its startup script automatically prepares the environment by creating a sandbox directory, installing key ML libraries, and launching the agent interface. The system is tightly integrated with the Claude Scientific Skills ecosystem, enabling the agent to leverage specialized scientific and machine learning tools. It is intended primarily for research and experimentation with autonomous ML workflows rather than as a polished production platform. Overall, karpathy represents an early step toward fully automated machine learning engineering driven by agentic AI systems. -
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BioEmu
Inference code for scalable emulation of protein equilibrium ensembles
Biomolecular Emulator (BioEmu for short) is a model that samples from the approximated equilibrium distribution of structures for a protein monomer, given its amino acid sequence. By default, unphysical structures (steric clashes or chain discontinuities) will be filtered out, so you will typically get fewer samples in the output than requested. The difference can be very large if your protein has large disordered regions, which are very likely to produce clashes. BioEmu outputs structures... -
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AlphaGenome
Programmatic access to the AlphaGenome model
The AlphaGenome API provides access to AlphaGenome, Google DeepMind’s unifying model for deciphering the regulatory code within DNA sequences. This repository contains client-side code, examples, and documentation to help you use the AlphaGenome API. AlphaGenome offers multimodal predictions, encompassing diverse functional outputs such as gene expression, splicing patterns, chromatin features, and contact maps. The model analyzes DNA sequences of up to 1 million base pairs in length and can... -
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MinerU
A high-quality tool for convert PDF to Markdown and JSON
MinerU is an open-source, high-quality document extraction toolkit focused on converting PDFs (and other document formats) into structured Markdown and JSON. It leverages OCR and layout analysis to preserve semantic structure and metadata, ideal for research and data science workflows. -
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PySINDy
A package for the sparse identification of nonlinear dynamical systems
...Instead of fitting a purely predictive machine learning model, PySINDy attempts to recover interpretable differential equations that explain how a system evolves over time. This approach is particularly valuable in scientific fields such as physics, engineering, and biology where researchers seek both predictive accuracy and theoretical insight. The library provides tools for constructing libraries of candidate functions, performing sparse regression, and validating discovered models against observed data. It integrates with standard Python scientific computing libraries, making it easy to apply to experimental datasets or simulated systems. -
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Academic Research Skills for Claude Code
Academic Research Skills for Claude Code
Academic Research Skills is a structured learning repository aimed at improving users’ ability to conduct rigorous academic research, particularly in technical and scientific domains. It compiles methodologies, frameworks, and best practices for literature review, critical analysis, and research writing. The project is designed as a self-guided resource, helping learners understand how to evaluate sources, synthesize information, and develop strong arguments. It likely integrates examples, templates, and conceptual explanations to bridge the gap between theory and practical research execution. ...
