Showing 2 open source projects for ".vcf"

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    DeepVariant

    DeepVariant

    DeepVariant is an analysis pipeline that uses a deep neural networks

    ...DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. DeepTrio is a deep learning-based trio variant caller built on top of DeepVariant. DeepTrio extends DeepVariant's functionality, allowing it to utilize the power of neural networks to predict genomic variants in trios or duos. See this page for more details and instructions on how to run DeepTrio. Out-of-the-box use for PCR-positive samples and low quality sequencing runs, and easy adjustments for different sequencing technologies and non-human species.
    Downloads: 14 This Week
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    Multiuser HylaFAX PHP/MySQL Web interface for viewing faxes online, downloading & emailing in PDF format, and categorizing & archiving all sent and received faxes.
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    Downloads: 26 This Week
    Last Update:
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