Showing 256 open source projects for "gnu science"

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  • 1
    S-Match

    S-Match

    S-Match is a semantic matching framework.

    S-Match is a semantic matching framework. S-Match takes any two tree like structures (such as database schemas, classifications, lightweight ontologies) and returns a set of correspondences between those tree nodes which semantically correspond to one another. S-Match contains implementations of the semantic matching, minimal semantic matching and structure preserving semantic matching algorithms. S-Match applies as a solution in many fields, including: information integration,...
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  • 2
    C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
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  • 3
    MXLib is a C++ wrapper around the Intel® Integrated Performance Primitives (IPP) library and NVidia NPP CUDA library. You can use either IPP code (or a subset of functions that do not require IPP) on the CPU side, or use NPP/CUDA on the GPU side, or use both together. The function syntax is similar to that found in MatLab and the library is designed to make it easy to port your code from MatLab to C++. The idea is to provide Scientists, Engineers, Researchers and other non full-time...
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  • 4

    HRDAG

    Framework for Hierarchical Graph Decomposition

    This is a framework used to decompose hierarchical graphs, i.e.,graphs which were created from or contain a hierarchy of modules. Each module is reused several times in the hierarchy. This may be useful to reverse-engineer human constructs like electronic equipment, manufactured machines, or bureaucratic hierarchies; but also to decompose natural constructs like gene-relation or protein-relation nets.
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  • 5
    Genetic Programming in OpenCL is a parallel implementation of genetic programming targeted at heterogeneous devices, such as CPU and GPU. It is written in OpenCL, an open standard for portable parallel programming across many computing platforms.
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  • 6
    Java Machine Learning Library is a library of machine learning algorithms and related datasets. Machine learning techniques include: clustering, classification, feature selection, regression, data pre-processing, ensemble learning, voting, ...
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  • 7
    JBernstein

    JBernstein

    JBernstein: Exploration techniques for non-linear constraint checking

    JBernstein is a tool implemented in Java that enables to check whether a polynomial constraint holds for all variables within their domain. It is mainly used in the verification or synthesis of cyber-physical systems where the system model is nonlinear. The tool also supports specifications in assume-guarantee style. The underlying algorithm is based on a translation to Bernstein polynomials, and several optimization techniques are implemented to ensure efficiency. Concerning performance,...
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  • 8

    ontocomp

    OntoComP is a Protégé 4 plug-in for completing OWL ontologies

    OntoComP is a Protégé 4 plug-in for completing OWL ontologies. It enables the user to check whether an OWL ontology contains "all relevant information" about the application domain, and extends the ontology appropriately if this is not the case. It achieves this by asking the user questions of the form "are instances of classes C1 and C2 also instances of class C3?". If the user confirms such a question, then a new axiom of the application domain that does not follow from the ontology has...
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  • 9
    Graphal

    Graphal

    Graph algorithms interpreter, IDE, debugger, 3D visualizations.

    Graphal is an interpreter of a programming language that is mainly oriented to graph algorithms. There is a command line interpreter and a graphical integrated development environment. The IDE contains text editor for programmers, compilation and script output, advanced debugger and visualization window. The progress of the interpreted and debugged graph algorithm can be displayed in 3D scene.
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  • 10

    ProximityForest

    Efficient Approximate Nearest Neighbors for General Metric Spaces

    A proximity forest is a data structure that allows for efficient computation of approximate nearest neighbors of arbitrary data elements in a metric space. See: O'Hara and Draper, "Are You Using the Right Approximate Nearest Neighbor Algorithm?", WACV 2013 (best student paper award). One application of a ProximityForest is given in the following CVPR publication: Stephen O'Hara and Bruce A. Draper, "Scalable Action Recognition with a Subspace Forest," IEEE Conference on Computer...
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  • 11
    Weka4OC GUI for Overlapping clustering

    Weka4OC GUI for Overlapping clustering

    Weka4OC: Weka for Overlapping Clustering is a GUI extending WEKA

    This is a GUI application for learning non disjoint groups based on Weka machine learning framework. It offers a variety of learning methods, based on k-means, able to produce overlapping clusters. The application also contains an evaluation framework that calculates several external validation measures. The application offers a visualization tool to discover overlapping groups.
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  • 12

    ktree

    clustering, machine learning, algorithms

    This project has moved to github at http://lmwtree.devries.ninja.
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  • 13
    IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
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  • 14

    ivl

    A C++ template library extending syntax towards mathematical notation

    ivl is a full-header template C++98 math library with convenient yet powerful syntax. It extends classic C++ syntax towards mathematical notation while making use of the language's elements like classes, structs, operators and functions. Expression written using ivl are excessively optimized. In other words, ivl allows writing simpler and more expressive statements using math-like formulas while taking care of optimizing them. ivl features arrays, tuples and custom function-like...
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  • 15
    Jenes - Genetic Algorithms for Java
    An optimized java library for genetic algorithms. The library is designed to be fast and memory light, but still very easy to use.
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  • 16
    Critterding

    Critterding

    Evolving Artificial Life

    Critterding is a "Petri dish" universe in 3D that demonstrates evolving artificial life. Critters start out with completely random brains and bodies, but will automatically start evolving into something with much better survival skills.
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    Downloads: 3 This Week
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  • 17
    Open Object Oriented ANSI C provide API to build Object Oriented application in ANSI C language. It provide common base classes that allow inheritance to develop application with your own reusable objects, and smart exception recovery support
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  • 18
    A capsule tree is a general purpose, self-balancing tree data structure for large, ordered, data-sets. It is designed to provide the same characteristics as B-trees and B+trees, but built from the ground up for in-memory usage. In other words, there are no provisions for “slow” I/O cases. The original motivation for this tree was a better backend for memory managers. However, the end result was a new sub-category of trees. The implementation giving here is just one implementation of...
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  • 19
    AIS is an Development Platform providing a high-speed JIT compiler for LISP and JavaScript, web server, object repositories, MySQL integration and libraries supporting a wide variety of advanced genetic programming and symbolic regression techniques.
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  • 20
    Semantic query optimization (SQO) is the process of finding equivalent rewritings of an input query given constraints that hold in a database instance. We present a Chase & Backchase (C&B) algorithm strategy that generalizes and improves on well-known methods in the field. The implementation of our approach, the pegasus system, outperforms existing C&B systems an average by two orders of magnitude. This gain in performance is due to a combination of novel methods that lower the complexity...
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  • 21

    libfgen

    Library for optimization using a genetic algorithm or particle swarms

    libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported.
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  • 22
    IMPORTANT: The project moved over to github! You can find it at: https://github.com/exhuma/python-cluster
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  • 23

    quadGT

    Software package for the joint genotyping

    quadGT is a software package for the joint genotyping of two parents, child’s normal genome and child’s tumor genome based on sequencing reads aligned to a reference genome.
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  • 24
    A light-weight group communication system/library of distributed algorithms implementations for agreement problems (e.g., Consensus, Unreliable Leader Election and Atomic Broadcast).
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  • 25
    parFE is fully-parallel high-performance finite element code targeted to the modeling of trabecular bones in humans. It employs scalable multigrid solvers for efficient solutions on massively parallel computers.
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