Search Results for "version 2"
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Showing 127 open source projects for "version 2"
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CrystalCMP
Easy-to-use tool for fast comparison of molecular packing
CrystalCMP is a code for comparing crystal structures. It is using two basic approaches for this purpose - the fingerprint and the RMSD approach. Result of the comparison is a similarity matrix and dendrogram. Read more here: J. Appl. Cryst. (2016). 49, 2172-2183 (https://doi.org/10.1107/S1600576716016058) and also here: J. Appl. Cryst. (2020). 53, 841-847 https://doi.org/10.1107/S1600576720003787 -
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Dynamic Arrays and Hashes (Delphi, C++)
Very fast classes for working with Dynamic Arrays in Delphi and C++
(New version 1.04 is released) Dynamic Arrays is a set of useful very fast classes for data manipulating in memory. Flexible memory control, functionality that standard containers do not have, fast operations (assembler implementation for x86 and x64 platforms). Available for Delphi all latest versions and for C++. Powerful Hash and Double Hash classes to work with pairs of values (key and value) and with values that have two keys (key1, key2, value). -
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Swiss Army Knife C++ Toolkit is a set of versatile tools for C++ development. It offers to a developer variety of everyday needed tools for programming. Among these tools are configuration files reader, Tokeniser, Singleton template and many more.
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This project is a reasoner for the description logic EL+. It computes the concept subsumption hierarchy. It is an OWL 2 EL reasoner.
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Base62 Encode/Decode Utility
A tool for encoding/decoding to base62
the package chewingum contains two main programs: - base62 - chew They have been implemented in perl. Base62 has been coded in c++ too. chew has been written to shorten long decimal integer numbers into base62 strings. It's not a mere base conversion, because it doesn't use arithmetic inside its logic. In this way it can convert very long numbers into strings quickly, without overflows. -
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Fun4Me
A package for functional annotation for metagenomes
This package includes a few programs for rapid functional annotation for metagenomic sequences, including, 1) Gene prediction by FragGeneScan; 2) Similarity search by RAPSearch2; 3) Functional annotation in GO (Gene Ontology) and EC (Enzyme Commission) based on similarity search results; 4) From EC to metabolic pathway reconstruction by MinPath. Inputs: Just sequencing reads (or assemblies) Outputs: Protein-coding genes (or gene fragments); similarity search; functional annotations... -
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Jojos Binary Diff
Binary Diff and Undiff Utility
JDIFF is a program that outputs the differences between two binary files, either in binary format or in human readable format (detailed or summarized) and then allows to reconstruct the second file from the first one and the diff-file. -
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FuzzyWuzzy
Fuzzy string matching in Python
We’ve made it our mission to pull in event tickets from every corner of the internet, showing you them all on the same screen so you can compare them and get to your game/concert/show as quickly as possible. Of course, a big problem with most corners of the internet is labeling. One of our most consistently frustrating issues is trying to figure out whether two ticket listings are for the same real-life event (that is, without enlisting the help of our army of interns). To pick an example... -
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Skalli
IVS & ILRS Reference Point Determination
Skalli is a simple tool to estimate the IVS (International VLBI Service for Geodesy and Astrometry) and ILRS (International Laser Ranging Service) reference point of a radio or laser telescope. -
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PMCGPU
Parallel simulators for Membrane Computing on the GPU
Membrane Computing is a new research area (within Natural Computing) that aims to provide computing devices abstracted from the functioning and structure of living cells. These devices are called P systems. The objective of this project (PMCGPU) is to bring together all the researchers working on the development of parallel simulators for P systems, specially those using the GPU (e.g. CUDA, OpenCL, etc). Other parallel platforms are also welcome (multicore and manycore, FPGAs,... -
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MyTinySTL
Achieve a tiny STL in C++11
This is a tinySTL based on C++11, which is my first project for practice. I use the Chinese documents and annotations for convenience, maybe there will be an English version later, but now I have no time to do that yet. Now I have released version 2.0.0. I have achieved the vast majority of the containers and functions of STL, and there may be some deficiencies and bugs. From version 2.x.x, the project will enter the stage of long-term maintenance, i.e., I probably will not add new content but only fix bugs found. ... -
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Latin Square Toolbox
Generates Latin squares and counts their transversals
The Latin Square Toolbox contains software tools for efficiently generating Latin squares and counting their transversals with various user-configurable options. This open source release aims to help educate folks on Latin squares and their important applications to cryptography. This version contains three tools: 0. Latin Square Generator (LSG) 1. Latin Square Transversal Counter (LSTC) 2. Latin Square Property Checker (LSPC) -
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CRUSH
Data reduction and imaging for select astronomical cameras
CRUSH is a pioneering reduction and imaging suite for many astronomical cameras operating at far-infrared, submillimeter and millimeter wavelengths, such as SHARC-2, SCUBA-2, LABOCA, GISMO, or SOFIA/HAWC+ (to name a few). -
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Arageli is a C++ library for computations in arithmetic, algebra, geometry, linear and integer linear programming. Arageli provides routines and classes that support precise, i.e. symbolic or algebraic, computations.
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CoRoPa stands for Computational Rough Paths. The aim of CoRoPa is to provide a software framework for various ideas related to Rough Path Theory, including rough differential equations and the digital description of serial data streams.
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Lib Clock for GCC (C++)
Library Clock for GCC (C++)
Simple library that provides the basic features to perform the time calculation between two times provided. The code of this library is published in the book: C++ Underground Programmer of the author Augusto Manzano (only portuguese). The book can be purchased from the "Clube de Autores" service - https://clubedeautores.com.br/book/209155--C_Underground_Programmer?topic=compiladores#.WNfZkJt_aKY. For more libraries, go to: https://sourceforge.net/u/augustomanzano/profile. To see my... -
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This project consists of various implementations of the Graphplan algorithm. At the moment we have two implementations of Graphplan: * Emplan - A C++ implementation for Linux, Windows and MacOS X * JavaGP - A Java implementation
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Genetic Programming Classifier is a distributed evolutionary data classification program. It uses the ensemble method implemented under a parallel co-evolutionary Genetic Programming technique.
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Dates
Fast calendar calculations for 10,000 years (Julian and Gregorian)
From the early 1970s up to nowadays the system date routines of computers usually mix up date with time calculations. Not only that they will expire sooner or later due to number overflow. Not only that this will make calendarian calculations extremely complicated. Fact is, that this will combine two things together which don't have anything to do with each other: The rotation of the earth around itself and the rotation of the earth around the sun, which in addition will both vary during the... -
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Primes
Calculate primes by using extremely fast sorting
This project considers the problem of calculating primes as a sorting problem. It includes the most efficient tree-based sorting algorithm that is possible and shows that finding a new prime can be done by sorting the differences between the previous primes in the right way. Unfortunately it has turned out that going this way is even more slowly than trying to find primes by brute force. So it can only be used as a test with heavy load for the sorting algorithm, which can be used for... -
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The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
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New Terrain and 3D Map System
a very lightweight advanced terrain-rendering and 3D map rendering sys
A very lightweight advanced terrain-rendering and 3D map rendering system. Minimal dependencies: OpenGL, SDL. It's distrib in 2-3 separate modules: 1. the C++ implementation of the terrain- and/or surface- rendering Algorithms I have developed: both a multithread and a non-multithread variant is relaeased. 2. Seme as at point 1. , but with a road-network rendering and collision-detection module I wrote before. It also adds some trees at the top of the terrain. (multitread vesion not... -
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COPEread
Connecting Overlapped Pair-End Reads
COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao... -
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kovacs.util (Java numerical classes)
!!! moved to jnum subproject under crush-software !!!
This project has be renamed to jnum and moved under the crush-software project. No further SVN commits here... -
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Utah Raster Toolkit
The Utah Raster Toolkit 3.0, patchlevel 2
This is the Utah Raster Toolkit distribution version 3.0 of June, 1990. ~~~ librle.a, image.rle file type support, animation, rletogif, converters, many utilities. RLE format supports a great number of raw inner formats for applications to use, known together as .rle (ie, "stored windowing") ~~~ The Utah Raster toolkit is a collection of programs and C routines for dealing with raster images commonly encountered in computer graphics. It provides the following major functions: ...
