Search Results for "jargs/gnu/cmdlineparser" - Page 5
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Showing 716 open source projects for "jargs/gnu/cmdlineparser"
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MSAProbs: Multiple Sequence Alignment
One of the most accurate multiple protein sequence aligners
MSAProbs is an open-source protein multiple sequence ailgnment algorithm, achieving the stastistically highest alignment accuracy on popular benchmarks: BALIBASE, PREFAB, SABMARK, OXBENCH, compared to ClustalW, MAFFT, MUSCLE, ProbCons and Probalign. -
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This project consists of various implementations of the Graphplan algorithm. At the moment we have two implementations of Graphplan: * Emplan - A C++ implementation for Linux, Windows and MacOS X * JavaGP - A Java implementation
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Dates
Fast calendar calculations for 10,000 years (Julian and Gregorian)
From the early 1970s up to nowadays the system date routines of computers usually mix up date with time calculations. Not only that they will expire sooner or later due to number overflow. Not only that this will make calendarian calculations extremely complicated. Fact is, that this will combine two things together which don't have anything to do with each other: The rotation of the earth around itself and the rotation of the earth around the sun, which in addition will both vary during the... -
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Primes
Calculate primes by using extremely fast sorting
This project considers the problem of calculating primes as a sorting problem. It includes the most efficient tree-based sorting algorithm that is possible and shows that finding a new prime can be done by sorting the differences between the previous primes in the right way. Unfortunately it has turned out that going this way is even more slowly than trying to find primes by brute force. So it can only be used as a test with heavy load for the sorting algorithm, which can be used for... -
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GAVS+
An open platform for the research of algorithmic game solving
GAVS+ (Game Arena Visualization and Synthesis, Plus!) is an open-source tool which enables to visualize a broad spectrum of algorithmic games used in verification and synthesis, and offers a standard interface with utility functions to establish connection with engineering practice. It is developed by Department of Informatics (Unit 6), TU München. The tool is mainly is served for research and educational purposes. The software is released under the GNU General Public License (v3... -
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Genetic Programming Classifier is a distributed evolutionary data classification program. It uses the ensemble method implemented under a parallel co-evolutionary Genetic Programming technique.
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cachelet
Cachelet - the simplest java framework for general purpose caching
Cachelet is a java framework for general purpose caching very simple and easy to use. And it has everything you need for caching without complications. -
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The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
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NEW OPTIMIZATION TECHNOLOGY & PLANNING EXPERIMENT. Technology is designed for multidimensional optimization practical problems with continuous object functions. Technology higher efficiency than traditional optimization methods.
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rose algorithms
this library include some important algorithms
Welcome to rose algorithms this library include some important algorithms by Ali Abdul Ghani(ali miracle) mail: blade.vp2020@gmail.com License: lgpl -
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New Terrain and 3D Map System
a very lightweight advanced terrain-rendering and 3D map rendering sys
A very lightweight advanced terrain-rendering and 3D map rendering system. Minimal dependencies: OpenGL, SDL. It's distrib in 2-3 separate modules: 1. the C++ implementation of the terrain- and/or surface- rendering Algorithms I have developed: both a multithread and a non-multithread variant is relaeased. 2. Seme as at point 1. , but with a road-network rendering and collision-detection module I wrote before. It also adds some trees at the top of the terrain. (multitread vesion not... -
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Open Simplex Project
A Simple GUI Implementation of the Simplex Algorithm
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COPEread
Connecting Overlapped Pair-End Reads
COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao... -
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GeoPDEs (moved to GitHub)
A package for Isogeometric Analysis in Octave and Matlab
GeoPDEs is a suite of software tools for research on Isogeometric Analysis of PDEs. GeoPDEs is free software implemented in Octave and fully compatible with Matlab. GeoPDEs is no longer developed at SF, and has moved to GitHub. Please visit http://rafavzqz.github.io/geopdes/ The mailing list will remain active. Releases up to 2.0.4 can be found here. From version 2.1.0 onward, see https://github.com/rafavzqz/geopdes -
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kovacs.util (Java numerical classes)
!!! moved to jnum subproject under crush-software !!!
This project has be renamed to jnum and moved under the crush-software project. No further SVN commits here... -
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Generic simple and efficient Fast Fourier Transforms (FFT) implementation using policy-based design and template metaprogramming in C++
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Utah Raster Toolkit
The Utah Raster Toolkit 3.0, patchlevel 2
...: * A device and system independent image format for storing images and information about them. Called the RLE format, it uses run length encoding to reduce storage space for most images. * A library of C routines for reading, writing and manipulating images stored in the RLE format. * A collections of programs for manipulating and displaying RLE images. License: says it's "GNU like" in the license. -
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iMet-Q (intelligent Metabolomic Quantitation) is an automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. It has a complete quantitation procedure for noise removal, peak detection and peak alignment. In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv...
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mathCollection is a java package representing a consistent and efficient extension to the Java Collection Framework of JDK 1.4. It offers different kinds of sets with mathematical, non-destructive functions.
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JGAP is a Genetic Algorithms and Genetic Programming package written in Java. It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included. Legal notice/Impressum: Klaus Meffert An der Struth 25 D-65510 Idstein sourceforge <at> klausmeffert.de
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Tetris Puzzle Solver
Fills a rectangle using given tetris shapes
Fills a rectangle using given tetris shapes (tetraminos) using an optimized brute force algorithm. A puzzle can have many different solutions; this solver will stop at the first one. Not all puzzles are solveable. Created to solve the annoying tetris puzzles in The Talos Principle and Sigils of Elohim. -
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SWAPHI-LS: Alignment on Xeon Phi Cluster
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host. -
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DJVU++
The DjVu complete solution,with OCR Technology(Arabic ,English).
DjVu++ is a user-friendly program that used to manipulate DjVu file formats such as eBooks with a penalty of editing features. The program introduce a free replacement for the property PDF format with similar resolution and smaller file size DjVu++ also support OCR to handle text in scanned books and images. The program shows good performance for English. In addition to the Arabic language to lead free and commercial software in this area. The main features of DjVu++ program are: o... -
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HeaDDaCHe
Hashed dynamic determinants for convex hulls
Description: We propose and implement in C++ the hashed dynamic determinants scheme. This consists of efficient implementations of dynamic determinant algorithms and a hash table that stores intermediate results (matrices and determinants) in order to be used in subsequent steps of the algorithm. Related papers: V.Fisikopoulos, L.Peñaranda. Faster Geometric Algorithms via Dynamic Determinant Computation. In Algorithms – ESA 2012, Lecture Notes in Computer Science Volume 7501,...