Showing 1261 open source projects for "drcom-for-linux"

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  • 1

    owl reasoning over big biomedical data

    A OWL reasoning framework for the analysis of big biomedical data

    A general OWL reasoning framework for the analysis of big biomedical data and implement a MapReduce-based property chain reasoning prototype system. OWL reasoning method is ideally suitable for problems involved complex semantic associations because it is able to infer logical consequences based on a set of asserted rules or axioms. MapReduce framework isused to solve the problem of scalability. In our experiment, we focus on the discovery of associations between Traditional Chinese Medicine...
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  • 2
    Open Simplex Project

    Open Simplex Project

    A Simple GUI Implementation of the Simplex Algorithm

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  • 3
    A P2P overlay construction toolkit, which supports routing algorithm researchers in addition to application developers. It provides multiple routing (DHT) algorithms such as Chord, Kademlia, Koorde, Pastry and Tapestry, and a distributed environment emu
    Downloads: 1 This Week
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  • 4
    Bat2015

    Bat2015

    Bachelor of Science (Informatik)

    The toolkit glpk supports methods for mixed integer linear programming (MILP). These methods solve Capital Budgeting Problems (CBP). Unfortunately, glpk does not support any multithreading and there is no feature to distribute problems via network connections. Today, this is a pitiable sight, because modern computer systems are coupled by networks and support multi threading. We create a distributed system with Apache thrift and the C-API of glpk. Now, it is possible to use as many cores in...
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  • 5

    GeoPDEs

    A package for Isogeometric Analysis in Octave and Matlab

    GeoPDEs is a suite of software tools for research on Isogeometric Analysis of PDEs. GeoPDEs is free software implemented in Octave and fully compatible with Matlab. GeoPDEs is no longer developed at SF, and has moved to GitHub. Please visit http://rafavzqz.github.io/geopdes/ The mailing list will remain active. Releases up to 2.0.4 can be found here. From version 2.1.0 onward, see https://github.com/rafavzqz/geopdes
    Downloads: 2 This Week
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  • 6
    SteppedStateMachine

    SteppedStateMachine

    Creates and operates a stepped state machine

    Implements a stepped state machine, i.e. a state machine which executes a single state transition at a time. Because of this, no data, e.g. state data, can be stored between executions. Instead, any such data must be stored in persistent storage between executions. This permits operation of the state machine as a CGI program in a web server. A WSGI or fastCGI or other such web server is not required. Received symbols may be received from sources outside the state machine, or may be...
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  • 7

    COPEread

    Connecting Overlapped Pair-End Reads

    COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao...
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  • 8
    TreeLayout

    TreeLayout

    Efficient and customizable TreeLayout Algorithm in Java, for NetBeans

    Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast. Downloads are available at https://sourceforge.net/projects/treelayout/files/. For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/. Development for TreeLayout has moved to...
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  • 9
    Generic simple and efficient Fast Fourier Transforms (FFT) implementation using policy-based design and template metaprogramming in C++
    Downloads: 1 This Week
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  • 10

    kovacs.util (Java numerical classes)

    !!! moved to jnum subproject under crush-software !!!

    This project has be renamed to jnum and moved under the crush-software project. No further SVN commits here...
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  • 11
    iMet-Q (intelligent Metabolomic Quantitation) is an automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. It has a complete quantitation procedure for noise removal, peak detection and peak alignment. In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv...
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  • 12
    Utah Raster Toolkit

    Utah Raster Toolkit

    The Utah Raster Toolkit 3.0, patchlevel 2

    This is the Utah Raster Toolkit distribution version 3.0 of June, 1990. ~~~ librle.a, image.rle file type support, animation, rletogif, converters, many utilities. RLE format supports a great number of raw inner formats for applications to use, known together as .rle (ie, "stored windowing") ~~~ The Utah Raster toolkit is a collection of programs and C routines for dealing with raster images commonly encountered in computer graphics. It provides the following major functions: ...
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  • 13
    pycrc

    pycrc

    CRC C source generator

    pycrc is an easy to use CRC (cyclic redundancy check) calculator and C source code generator. The generated source code can be optimized for simplicity, speed or space. pycrc contains a long parameter list of common CRC models. The program is self contained and does not require installation. Apart from a python installation, it does not require other libraries to be installed.
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  • 14

    MDA

    Molecular Dynamics Analyzer (MDA)

    MDA is a 3D single-particle tracking software that explicitly addresses fluorescence microscopy experiments deep in living specimens. It is capable of minimizing the systematic error that occurs with astigmatism-based 3D techniques owing to the aberrations induced by the refractive index mismatch. In contrast to existing techniques, the method determines the aberration directly from the acquired 2D image stream by exploiting the inherent particle movement and the redundancy introduced by the...
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  • 15

    BinMatrix_Test

    Programm for test BinMatrix, a class for manage binary matrices.

    Programm for test BinMatrix, a class for manage binary matrices.
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  • 16
    mathCollection is a java package representing a consistent and efficient extension to the Java Collection Framework of JDK 1.4. It offers different kinds of sets with mathematical, non-destructive functions.
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  • 17
    FileHelpers Library
    http://www.filehelpers.net The FileHelpers are an easy to use .NET library written in C#. Is designed to read/write data from flat files with fixed length or delimited records (CSV). Also has support to import/export data from different data storages (Excel, Access, SqlServer) Code on GitHub: https://github.com/MarcosMeli/FileHelpers
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  • 18
    Tetris Puzzle Solver

    Tetris Puzzle Solver

    Fills a rectangle using given tetris shapes

    Fills a rectangle using given tetris shapes (tetraminos) using an optimized brute force algorithm. A puzzle can have many different solutions; this solver will stop at the first one. Not all puzzles are solveable. Created to solve the annoying tetris puzzles in The Talos Principle and Sigils of Elohim.
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  • 19
    JGAP is a Genetic Algorithms and Genetic Programming package written in Java. It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included. Legal notice/Impressum: Klaus Meffert An der Struth 25 D-65510 Idstein sourceforge <at> klausmeffert.de
    Downloads: 10 This Week
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  • 20
    Javascript-Voronoi

    Javascript-Voronoi

    JS implementation of Fortune's algorithm to compute Voronoi cells

    This repository implements Steven Fortune’s algorithm (sweep-line method) for generating Voronoi diagrams in JavaScript, providing a performant browser-side solution for computational geometry of planar point sets. With this library you can feed a set of sites (points) and compute their Voronoi cells – the partition of the plane into regions closest to each site – in O(n log n) time. It’s especially useful in web UIs, visualizations, interactive maps, and generative-art contexts where you...
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  • 21
    DJVU++

    DJVU++

    The DjVu complete solution,with OCR Technology(Arabic ,English).

    DjVu++ is a user-friendly program that used to manipulate DjVu file formats such as eBooks with a penalty of editing features. The program introduce a free replacement for the property PDF format with similar resolution and smaller file size DjVu++ also support OCR to handle text in scanned books and images. The program shows good performance for English. In addition to the Arabic language to lead free and commercial software in this area. The main features of DjVu++ program are: o...
    Downloads: 8 This Week
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  • 22

    SWAPHI-LS: Alignment on Xeon Phi Cluster

    Smith-Waterman long DNA sequence alignment on Xeon Phi clusters

    The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host.
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  • 23

    GTkNN

    GPU-based Textual kNN (GT-kNN)

    The following code is a parallel kNN implementation that uses GPUs for the high dimensional data in text classification. You can use it to classify documents using kNN or to generate meta-features based on the distances between a query document and its k nearest neigbors
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  • 24
    The project objective is the development of an optimization algorithm for the problem of stowing general cargo into platform supply vessels.
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  • 25

    HeaDDaCHe

    Hashed dynamic determinants for convex hulls

    Description: We propose and implement in C++ the hashed dynamic determinants scheme. This consists of efficient implementations of dynamic determinant algorithms and a hash table that stores intermediate results (matrices and determinants) in order to be used in subsequent steps of the algorithm. Related papers: V.Fisikopoulos, L.Peñaranda. Faster Geometric Algorithms via Dynamic Determinant Computation. In Algorithms – ESA 2012, Lecture Notes in Computer Science Volume 7501,...
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