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ChIPOTle 2.0 is a user friendly tool for performing peak detection in ChIP-chip signal. The tool also has functions for probe sorting, signal normalization, replication merging, and multiple correction testing in a windows interface or *nix command line.
neochip is a collection of algorithms for high-density oligonucleotide microarrays. The current version contains heuristic algorithms that attempt to improve the quality of arrays by re-designing their layout (the location of the probes on the chip).
The OS561 operating system based around FORTH/Java. The OS is to run on a VHDL chip OpenHardware design called the Minon, but could become available for other platforms. The unique point of the design is a revolutionary data compression technology.