DRAMMS
A Deformable Medical Image Registration Toolbox
...Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania.
Some typical applications of DRAMMS include,
-- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc);
-- Mono- and Multi-modality registration (MRI, CT, histology);
-- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc);
-- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts).
DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. ...