Search Results for "multiple sequence alignment"
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Showing 12 open source projects for "multiple sequence alignment"
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1
UCO3D
Uncommon Objects in 3D dataset
...It provides about 170,000 full videos per object instance rather than still frames, along with per-video annotations including object masks, calibrated camera poses, and multiple flavors of point clouds. Each sequence also ships with a precomputed 3D Gaussian Splat reconstruction, enabling fast, differentiable rendering workflows and modern implicit/point-based modeling experiments. The repository includes automated downloaders with checksum verification, fine-grained controls to fetch only selected modalities or super-categories, and a lightweight Python API for loading frames, geometry, and splats on demand. ... -
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Qwen3
Qwen3 is the large language model series developed by Qwen team
...The latest updated version, Qwen3-235B-A22B-Instruct-2507, features significant improvements in instruction-following, reasoning, knowledge coverage, and long-context understanding up to 256K tokens. It delivers higher quality and more helpful text generation across multiple languages and domains, including mathematics, coding, science, and tool usage. Various quantized versions, tools/pipelines provided for inference using quantized formats (e.g. GGUF, etc.). Coverage for many languages in training and usage, alignment with human preferences in open-ended tasks, etc. -
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HunyuanCustom
Multimodal-Driven Architecture for Customized Video Generation
HunyuanCustom is a multimodal video customization framework by Tencent Hunyuan, aimed at generating customized videos featuring particular subjects (people, characters) under flexible conditions, while maintaining subject/identity consistency. It supports conditioning via image, audio, video, and text, and can perform subject replacement in videos, generate avatars speaking given audio, or combine multiple subject images. The architecture builds on HunyuanVideo, with added modules for... -
4
Profile Data
Analyze computation-communication overlap in V3/R1
...The repository contains JSON trace files like train.json, prefill.json, decode.json, and associated assets. Users can load them into tools like Chrome tracing to inspect GPU idle times, overlapping operations, and scheduling alignment. The idea is to bring transparency to internal efficiency tradeoffs, enabling researchers to reproduce, analyze, or improve on DeepSeek’s parallelism strategies. The README explains how trace data corresponds to forward/backward chunks, settings (e.g. EP64, TP1, 4K sequence length), and notes that pipeline communication is excluded for simplicity. -
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5
Tiktoken
tiktoken is a fast BPE tokeniser for use with OpenAI's models
tiktoken is a high-performance, tokenizer library (based on byte-pair encoding, BPE) designed for use with OpenAI’s models. It handles encoding and decoding text to token IDs efficiently, with minimal overhead. Because tokenization is a fundamental step in preparing text for models, tiktoken is optimized for speed, memory, and correctness in model contexts (e.g. matching OpenAI’s internal tokenization). The repo supports multiple encodings (e.g. “cl100k_base”) and lets users switch encoding... -
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HunyuanVideo-Avatar
Tencent Hunyuan Multimodal diffusion transformer (MM-DiT) model
HunyuanVideo-Avatar is a multimodal diffusion transformer (MM-DiT) model by Tencent Hunyuan for animating static avatar images into dynamic, emotion-controllable, and multi-character dialogue videos, conditioned on audio. It addresses challenges of motion realism, identity consistency, and emotional alignment. Innovations include a character image injection module, an Audio Emotion Module for transferring emotion cues, and a Face-Aware Audio Adapter to isolate audio effects on faces, enabling multiple characters to be animated in a scene. Character image injection module for better consistency between training and inference conditioning. ... -
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Protenix
A trainable PyTorch reproduction of AlphaFold 3
Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as “Protenix-Mini,” offering a trade-off between speed/compute cost and predictive accuracy — making structure prediction accessible even in resource-constrained environments. ... -
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Qwen2.5-Math
A series of math-specific large language models of our Qwen2 series
Qwen2.5-Math is a series of mathematics-specialized large language models in the Qwen2 family, released by Alibaba’s QwenLM. It includes base models (1.5B / 7B / 72B parameters), instruction-tuned versions, and a reward model (RM) to improve alignment. Unlike its predecessor Qwen2-Math, Qwen2.5-Math supports both Chain-of-Thought (CoT) reasoning and Tool-Integrated Reasoning (TIR) for solving math problems, and works in both Chinese and English. It is optimized for solving mathematical... -
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Step-Audio-EditX
LLM-based Reinforcement Learning audio edit model
Step-Audio-EditX is an open-source, 3 billion-parameter audio model from StepFun AI designed to make expressive and precise editing of speech and audio as easy as text editing. Rather than treating audio editing as low-level waveform manipulation, this model converts speech into a sequence of discrete “audio tokens” (via a dual-codebook tokenizer) — combining a linguistic token stream and a semantic (prosody/emotion/style) token stream — thereby abstracting audio editing into high-level... -
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10
Metaseq
Repo for external large-scale work
Metaseq is a flexible, high-performance framework for training and serving large-scale sequence models, such as language models, translation systems, and instruction-tuned LLMs. Built on top of PyTorch, it provides distributed training, model sharding, mixed-precision computation, and memory-efficient checkpointing to support models with hundreds of billions of parameters. The framework was used internally at Meta to train models like OPT (Open Pre-trained Transformer) and serves as a... -
11
fashion-clip
CLIP model fine-tuned for zero-shot fashion product classification
FashionCLIP is a domain-adapted CLIP model fine-tuned specifically for the fashion industry, enabling zero-shot classification and retrieval of fashion products. Developed by Patrick John Chia and collaborators, it builds on the CLIP ViT-B/32 architecture and was trained on over 800K image-text pairs from the Farfetch dataset. The model learns to align product images and descriptive text using contrastive learning, enabling it to perform well across various fashion-related tasks without... -
12
bge-base-en-v1.5
Efficient English embedding model for semantic search and retrieval
...This version (v1.5) improves retrieval performance and stabilizes similarity score distribution without requiring instruction-based prompts. With 768 embedding dimensions and a maximum sequence length of 512 tokens, it achieves strong performance across multiple MTEB benchmarks, nearly matching larger models while maintaining efficiency. It supports use via SentenceTransformers, Hugging Face Transformers, FlagEmbedding, and ONNX for various deployment scenarios. Typical usage includes normalizing output embeddings and calculating cosine similarity via dot product for ranking.
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