Search Results for "vmd plugin"
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Showing 3 open source projects for "vmd plugin"
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1
BFEER
Binding Free Energy EstimatoR (BFEER): A VMD plugin for MMPBSA and LIE
BFEER is an open-source GUI-based VMD Plugin for estimating free energy using popular endpoint methods like MMPBSA and LIE. It is designed to work with NAMD's DCD-PSF files. -
2
vmdStore
vmdStore provides a user-friendly interface to free install VMD plugin
vmdStore provides a user-friendly interface to free install VMD plugins. vmdStore also helps you keeping the plugins always updated. Minimum Requirements Operating System: macOS, Linux, or Windows Visual Molecular Dynamics (VMD) 1.9.3 or later -
3
Truncate Trajectory (VMD plugin)
reduces the size of MD trajectories
Large trajectories have a lot of redundant hetero compounds which augment their size and render calculations cumbersome. Truncate Trajectory is designed to help you discard these compounds. It currently works only with parallelepiped unit cells and periodic boundary conditions, as it is able to detect periodic contacts with hetero compounds from the 26 nearest cells, and incorporates these compounds to the final trajectory. The dimensions and angles (a, b, c, alpha, beta, and gamma) should...
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