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Showing 2 open source projects for "transdecoder"

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    TranscriptDecoder

    Extracting likely coding regions from transcript sequences

    Downloads: 0 This Week
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    Just_Annotate_My_Genome

    Comprehensively annotate your non-model species genome.

    Uses an existing exonerate output or just predicted proteins (e.g. from Transdecoder or just a FASTA file) to prepare gene prediction inputs for Augustus, SNAP and geneid. Exonerate is run (enabled via AAT) if it is not provided. GTF file is produced to judge quality of annotation. Sorts out high quality alignments from those that don't meet the criteria.
    Downloads: 0 This Week
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