Search Results for "soapsnp"
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Showing 2 open source projects for "soapsnp"
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SOAPsnp
Soapsnp in house version, multi-thread and bam format supported.
SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). Despite its name, the program is a resequencing utility that can assemble consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on the known reference. The SNPs can then be identified on the consensus sequence through the comparison with the reference. In the first Asian genome re-sequencing project, evalution of SOAPsnp result on Illumina HapMap 1M BeadChip... -
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Gaea
Gaea is designed for re-sequencing tasks.
Serving as a flexible cloud-based framework, Gaea includes the majority of currently popular algorithms for sequence alignment (SOAP2, Bowtie, and BWA) and biomarker discovery (SOAPsnp, SAMtools, and Dindel). It surpasses the performance of currently available alignment software by aggregating their advanced functionalities into a unified cloud-based solution. Due to the internal Hadoop infrastructure, intermediated results from different software algorithms can be efficiently organized...
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