Search Results for "soapsnp"

...In the first Asian genome re-sequencing project, evalution of SOAPsnp result on Illumina HapMap 1M BeadChip Duo genotyping sites shows great accuracy. Over 99% of the genotyping sites are covered at over 99.9% consistency. Further PCR plus Sanger sequencing of the inconsistent SNP sites confirmed majority of the SOAPsnp results.

Serving as a flexible cloud-based framework, Gaea includes the majority of currently popular algorithms for sequence alignment (SOAP2, Bowtie, and BWA) and biomarker discovery (SOAPsnp, SAMtools, and Dindel). It surpasses the performance of currently available alignment software by aggregating their advanced functionalities into a unified cloud-based solution. Due to the internal Hadoop infrastructure, intermediated results from different software algorithms can be efficiently organized and returned. Thus, it is easy to use Gaea for developing different customized, scalable analysis pipelines corresponding to the needs of specific research problems in different domains.