Search Results for "shannon"
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Showing 15 open source projects for "shannon"
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Libro
An interactive program for statistical analysis of texts
A cross-platform text analysis program written in Python and Free Pascal/Lazarus which scans a whole text file (in plain text, HTML, EPUB, or ODT formats) and ranks all used words according to frequency, performing a quantitative analysis of the text using Shannon-Weaver information statistic and Zipf power law function. It counts words, sentences, chars, spaces, and syllables. Also computes readability indexes (Gunning-Fog, Coleman-Liau, Automated Readability Index (ARI), SMOG grade, Flesch... -
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vipie
http://vipie.rd.tuni.fi/vipie/index.html
Open access and web based virome population profiling for multi-sample metagenomics NGS, please note that the web server has been updated to: http://vipie.rd.tuni.fi/vipie/index.html Now supporting COVID-19 User guide: http://vipie.rd.tuni.fi/vipie/doc/vipie_user_guide.pdf Open access: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3721-7 Please cite: Lin, J., Kramna, L., Autio, R. et al. Vipie: web pipeline for parallel characterization of viral populations... -
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MothurR
This program mainly produces R scripts using Mothur result files.
The program generates R scripts to draws line/bar graphs using Mothur diversity and classification files, to calculate Shannon indexes, to perform PCA, Mann-Whitney U test, and pMANOVA test. -
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VBioindex
A Visual Tool to Estimate Biodiversity
... indices such as the Shannon-Wiener index, species richness, evenness, and relative dominance of species. We developed VBioindex, a user-friendly program, which is capable of measuring the Shannon-Wiener index, species richness, evenness, and relative dominance. VBioindex serves as an easy to use interface and visually represents the results in the form of a simple chart. Reference : D.S. Yu and S. H. Yoo, VBioindex: A Visual Tool to Estimate Biodiversity, Genomics Inform. 2015 Sep; 13(3): 90–92. -
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PHYSICO2
PHYSICO2: Software for Computation of Properties of Protein Sequences
Program: PHYSICO2: An UNIX based Standalone Procedure for Computation of Physicochemical, Window-dependent and Substitution Based Evolutionary Properties of Protein Sequences along with Automated Block Preparation Tools, Version 2 . Version:--v2.0 - improved version of PHYSICO: Gupta et al Bioinformation, 10(2), 105-107, 2014 Author:c)--Shyamashree Banerjee1+, Parth Sarthi Sen Gupta1+, Arnab Nayek1+, Sunit Das1, Vishma Pratap Sur1, Pratyay Seth1, Rifat Nawaz Ul Islam1, & Amal K... -
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Cochlea Implant Simulator
Simulates how speech and music sound through a cochlea implant
This program simulates how speech, music, and daily noise may sound to a person using a cochlea implant. The sound examples are processed using the noise vocoder proposed by Shannon. The program has been demonstrated at the "Long Night of Science - 2013" at HTW Berlin. -
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A plain C library of functions to compute ecological diversity - equitability - species richness. Includes: Shannon-Wiener, Simpson, Margalef, Berger-Parker, McIntosh, Brillouin, Q, Menhinick, Strong, Gini, RS, Atkinson, Theil, Kolm, ...
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An implementation of the Markovian Jensen Shannon divergence (MJSD). The code recursively segments a sequence of symbols and then assesses the divergence of each segment with respect to the entire sequence.
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A code for fast multi-dimensional density estimation . Instead of assuming an a-priori metric definition, it calculates a locally adaptive metric for each data point by using, a Shannon Entropy based, binary space partitioning scheme.
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2x2 G-statistic software available. Development of species diversity index calculator is planned. Indices include: Shannon-Weiner index, species richness, and Simpson's index. Other diversity indices will be incorporated at a later date.
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file sharing servent using MFC, the current project "Shannon" is based on the brilliant gnutella servent "Gnewtella" by Crusadr
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R package kOO
implementing k-spatial entropy methodology
The R package to be built aims at implementing what I did in a few scripts for the preparation of the papers I published in CaGEO and TGIS (see below). Basically this is related to the computation of the distribution of k co-occurrences of spatial events (generalising the contiguity distributions - 2 co-occurrences at distance 0) to derive spatial clustering statistics (mainly using the Shannon entropy, then called the k-spatial entropy) and methods linked to this: SOOk, SelSOOk (see caGEO...
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