Search Results for "multiscale"
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Showing 20 open source projects for "multiscale"
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WSClean
WSClean is a fast widefield interferometric imager
WSClean (w-stacking clean) is a fast generic widefield imager. It uses the w-stacking algorithm and can make use of the w-snapshot algorithm. As of Feb 2014, it is 2-12 times faster than CASA's w-projection, depending on the array configuration. It supports full-sky imaging and proper beam correction for homogeneous dipole arrays such as the MWA. WSClean allows Hogbom and Cotton-Schwab cleaning and has wideband, multiscale, compressed sensing and joined-polarization deconvolution modes. All... -
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StochKit is an extensible stochastic simulation framework developed in C++ that aims to make stochastic simulation accessible to practicing biologists and chemists, while remaining open to extension via new stochastic and multiscale algorithms. StochKit is part of the StochSS project [http://www.stochss.org/], and we are relying on continued funding for sustained development. Please consider registering to show your support. Register here: https://docs.google.com/forms/d/12tAH4f8CJ-3F...
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MuPIF
Multi-Physics Integration Framework (MuPIF)
..., discretization techniques, and also the distributed applications. The development of MuPIF is at present suppoted by the EU project Multiscale Modelling Platform: Smart design of nano-enabled products in green technologies, http://mmp-project.eu/, project number 604279. -
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Multi-scaleMaskingofPoints
Subjects point geographic data sets to masking at different resolution
See: Clarke, K. C. (2015) Multi-scale Masking of Point Geographic Data. International Journal of Geographical Information Science. vol. 29. (accepted) -
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Moose
Multiscale Neuroscience and Systems Biology Simulator
Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code. -
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement...
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IMJ
A Java image processing library
IMJ is a Java image processing library used for a small research project. Its goal is to handle multiscale analysis of biomedical whole slide images (WSIs). -
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MPI/C++ code to generate initial conditions for cosmological simulations using multiscale gaussian random fields, based on Edmund Bertschinger's GRAFIC-2 package. Provides a replacement for both grafic1 and grafic2.
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VirtualRoot
CPIB project aims to create a multiscale model of a plant root
The Centre for Plant Integrative Biology’s (University of Nottingham) core project aims to create a multiscale model of a plant root, based on the model higher plant Arabidopsis thaliana -
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MICROMECHANICS
A collection of lecture notes and accompanying code on micromechanics
The collection MICROMECHANICS (micromechanics.zip) includes: (1) lecture notes (microbook.pdf) on the analysis of heterogeneous materials and homogenization, and (2) source codes (microcode.tar.bz2) that accompany the computational exercises in Part II of the notes. Instructions on using the codes are given in the README file of each exercise. Further instructions can be found in the file microcode.tar.bz2. The MATLAB codes are used for visualization, evaluating analytical bounds... -
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SemSim API
A Java API for programmatic manipulation of SemSim models
SemSim is a semantics-based, multiscale model-description architecture designed to facilitate the sharing, reuse, and modular construction of a wide range of biological models. The SemSim API is being developed to provide the biological modeling community with a rich toolset for programmatically manipulating SemSim models. -
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LiVT
Create a variety of visualisations from high-resolution DTM
The intention behind this Lidar Visualisation Toolbox is to provide an easy-to-use, stand-alone application to create visualisations from high-resolution airborne LIDAR-based digital elevation data. LiVT also includes tools like raster file creation from xyz point clouds. A few mouse clicks and some processing time should be enough to go from an xyz ASCII file to a grey-scale SVF image, an LRM map or a percentage map of cumulative visibility. As LiVT does not include a data viewer,... -
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RALIB
Randomized Algorithms Library
RALIB provides a library of general-purpose numerical algorithms for analyzing large, high dimensional, multimodal datasets. It currently includes a) the Randomized Singular Value Decomposition, b) the Randomized Approximate Nearest Neighbors, c) the Multiscale Singular Value Decomposition, d) the Heat Kernel Coordinates, and e) the Heat Kernel Function Estimation algorithms. The algorithms are implemented as Fortran95 modules with OpenMP to utilize multiple cores/CPUs. It requires the BLAS... -
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MCC-LIDAR
Multiscale Curvature Classification for LIDAR Data
MCC-LIDAR is a C++ application for processing LiDAR data in forested environments. It classifies data points as ground or non-ground using the Multiscale Curvature Classification algorithm. -
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ShiVaSmiles
A slick interface to see various scale analysis algorithms in action.
The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content ! -
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The Multiscale Coupling Library and Environment (MUSCLE) is a platform independent agent system to couple multiscale simulations. MUSCLE provides the software framework to build simulations according to the complex automata theory.
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FAUNUS is an object oriented class library for molecular simulation, written in C++. It contains routines and utility programs for, Metropolis Monte Carlo sampling (NVT, NPT, NmuT ensembles), Macromolecules, Proton Titration, Widom Analysis etc.
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Feature extraction toolkit based on a wavelet multiscale vision model. Includes 1D signal processing sample application for line identification and classification of astronomical spectra.
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