Search Results for "lep-map3"
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Showing 6 open source projects for "lep-map3"
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...Please note Lep-Anchor for anchoring genomes with Lep-MAP3 linkage maps http://sourceforge.net/projects/lep-anchor
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Lep-Anchor
Linkage map guided genome anchoring
Lep-Anchor has been developed to efficiently anchor genomes into chromosomes by using all the information provided by Lep-MAP3 and the additional information provided by long reads and contig-contig alignments to link contigs and to collapse haplotypes. Lep-Anchor supports millions of markers over multiple maps. Pasi Rastas, Lep-Anchor: Automated construction of linkage map anchored haploid genomes, Bioinformatics, btz978, https://doi.org/10.1093/bioinformatics/btz978 -
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LEP
Literate programming for eclipse
Literate Eclipse Programming assists developers in writing structured, well documented source code. LEP integrates automated extraction of source code and documentation into a familiar eclipse environment. Compiling and debugging are fully supported. -
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Lep-MAP2
Linkage map construction suite
Note: Lep-MAP3 is now available https://sourceforge.net/projects/lep-map3/. Expect 20x-1000x speedup over LM2 and more accurate maps. Lep-MAP2 is a novel linkage map construction software suite. Please refer to the wiki for its documentation. For further information, please contact Pasi Rastas, pasi.rastas@gmail.com. If you use Lep-MAP2, please cite Construction of ultra-dense linkage maps with Lep-MAP2: stickleback F2 recombinant crosses as an example P. ... -
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Lep-MAP
fast and accurate linkage map construction for large SNP datasets
Lep-MAP is a novel linkage map construction software. Note there is a new version, Lep-MAP2 available in https://sourceforge.net/projects/lepmap2/ Also note a bug in Lep-MAP: genotype alleles should be given in numerical order like "1 2", not as "2 1". If you use Lep-MAP, please cite Lep-MAP: fast and accurate linkage map construction for large SNP datasets Pasi Rastas; Lars Paulin; Ilkka Hanski; Rainer Lehtonen; Petri Auvinen Bioinformatics 2013; doi: 10.1093/bioinformatics/btt563 -
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Customizable Observation Video imagE Record. COVER software has been designed and developed by Ifremer / LEP in complement of existing software for underwater vehicle videos/photos analysis.
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