Search Results for "kinetic"
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Showing 59 open source projects for "kinetic"
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Create
Building Tools and Aesthetic Technology
Create is a large Minecraft modification that introduces mechanical engineering systems, automation tools, and kinetic machinery into the game. The mod focuses on building complex contraptions powered by rotational energy rather than relying on traditional redstone circuitry alone. Players can design elaborate machines using components such as shafts, gears, belts, and mechanical devices that interact with each other to automate crafting, farming, and resource processing. -
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Trixi.jl
Trixi.jl: Adaptive high-order numerical simulations of hyperbolic PDEs
Trixi.jl is a numerical simulation framework for hyperbolic conservation laws written in Julia. A key objective for the framework is to be useful to both scientists and students. Therefore, next to having an extensible design with a fast implementation, Trixi.jl is focused on being easy to use for new or inexperienced users, including the installation and postprocessing procedures. -
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Smilei
Particle-in-cell code for plasma simulation
...It uses a C++ core with Python-based input and post-processing workflows, making simulations both performant and configurable. Its main value is giving plasma researchers a collaborative, extensible, and high-performance PIC platform for large-scale kinetic simulations. -
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SpectralWorks
View, manipulate, analyze (LS fit, SVD, FT), and make figs of, spectra
...Advanced functions include fitting spectra as LC of standard basis spectra, singular value decomposition, Fourier transform, differentiation, integration, global fitting of 3D titration and kinetic data. Graphics features allow composing Figures and export to postscript files which can be converted to pdf, imported into PhotoShop for rasterization, or used in page design software like Illustrator. -
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ViralMint
Open-source AI video pipeline, fully automated with MCP
...It transcribes top performers locally with Whisper, extracts the hook and structure with AI, then assembles original videos — AI-written scripts, AI voiceover (Gemini 3.1 Flash TTS, free Edge TTS, or a voice you cloned on-device), word-by-word animated captions and background music — or generates AI video clips with Sora 2 Pro, Veo 3.1, Seedance and Wan. Newer modes turn a prompt into motion-graphics animations (kinetic typography rendered from HTML) and turn any website URL into a polished promo video. -
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Chemical Trajectory Analyzer
A software package for processing and analyzing chemical trajectories
...Theory Comput. 11 (2015), 2517-2524 L.C.Kröger, W.A.Kopp, M.Döntgen, K.Leonhard, "Assessing Statistical Uncertainties of Rare Events in Reactive Molecular Dynamics Simulations", J. Chem. Theory Comput. 13 (2017), 3955-3960 M.Döntgen, F.Schmalz, W.A.Kopp, L.C.Kröger, K.Leonhard, "Automated Chemical Kinetic Modeling via Hybrid Reactive Molecular Dynamics and Quantum Chemistry Simulations", J. Chem. Inf. Model. 58 (2018), 1343-1355 Check the Wiki for bug reports and fixes. -
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Eagle Mode
Zoomable user interface (ZUI) with file manager, file viewers and more
Eagle Mode is a zoomable user interface (ZUI) with file manager, file viewers, games, and more. This project is about a futuristic style of human-computer interaction, where the user can visit almost everything simply by zooming in. It features a portable C++ toolkit API for developing such ZUIs, and it features the Eagle Mode application, which provides a virtual cosmos with plugin applications. The most important one is the professional file manager with its rich, scriptable command... -
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cosmic-dynamics-system
Programming Cosmic Dynamics A Practical Guide in 11 Popular Languages
NKTg Ground Vehicle A real-time robot vehicle controlled entirely by NKTg (mass-kinetic energy function) — physical sensors feed actual x, v, m, dm/dt data into the NKTg engine running at 100 Hz on an ESP32, which issues motor commands in real time. What This Is This is a hardware implementation of NKTg control theory — not a simulation, not a demo. The vehicle collects live sensor data, computes NKTg_1 and NKTg_2 on-chip, and drives motors accordingly — all without a host computer once flashed. ... -
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Kinetic.jl
Universal modeling and simulation of fluid mechanics upon ML
Kinetic is a computational fluid dynamics toolbox written in Julia. It aims to furnish efficient modeling and simulation methodologies for fluid dynamics, augmented by the power of machine learning. Based on differentiable programming, mechanical and neural network models are fused and solved in a unified framework. Simultaneous 1-3 dimensional numerical simulations can be performed on CPUs and GPUs. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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The Kinetic Simulation Algorithm Ontology (KiSAO; http://co.mbine.org/standards/kisao) is an ontology of algorithms for simulating and analyzing biological models, as well as the characteristics of these algorithms, their input parameters, and their outputs. In addition, KiSAO captures relationships among algorithms, their parameters, and their outputs.
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Modal Plotter
Create Strain and Kinetic Energy Density maps from FEA
Create Strain and Kinetic Energy Density maps out of a Natural Frequency extraction analysis (i.e. modal analysis). Works with a variety of FEA results format: NASTRAN, ABAQUS, Ansys, Medina/Permas. -
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source code and example runs for kinetic Monte Carlo simulations example runs reproduce the data used in Schaedel et al. Nature Physics 15, 830-838(2019) runtime for each examples takes seconds to minutes depending on the problem type based on a variable step size method coupled (VSSM) to a random selection method (RSM), see Lukkien et al. (1998) Efficient Monte Carlo methods for the simulation of catalytic surface reactions.
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Kinetic Scrolling Plugin
Kinetic Scrolling plugin for Canvas using Phaser Framework
Phaser Kinetic Scrolling Plugin introduces kinetic scrolling behavior to Phaser games, mimicking the natural scrolling experience found in mobile applications. It's particularly useful for creating scrollable menus, maps, or content areas within games. -
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austenite transformations simulator
A solver for austenite transformations simulation.
...It has a text file in/out interface. Also there is a windowed shell for the calculation result processind and import selected results to excel files. Thermodynamics and kinetic calculations. For MS Windows only. -
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Computation of empirical parameters in user-defined non-linear chemical kinetic models. Has a facility to compare 3 empirical models on the same graph to visually judge which model predicts the experimental data better. The empirical models can be input in the GUI as user-defined functions. This tool was written for the publication of "Modelling of Curing Kinetics of Amine Cured Epoxy Resins for Vacuum Assisted Resin Infusion Molding" (The Canadian Journal of Chemical Engineering, 2013), where the proposed empirical mathematical model was verified with experimental data to predict conversion rate of curing kinetics. ...
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KMC-KaiC
Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock
This code is a dedicated Kinetic Monte Carlo (KMC) algorithm which simulates a model of the post-translational Kai circadian clock. The code allows you to simulate the Kai system at the level of individual KaiC hexamers and monomers and explicitly tracks the turnover of every ATP nucleotide. Apart from ATP hydrolysis, all reactions obey detailed balance. The application of the code is described in our article titled "A Thermodynamically consistent model of the post-translational Kai circadian clock", which is freely available at the open access journal PLOS Computational Biology: https://doi.org/10.1371/journal.pcbi.1005415 *UPDATE* We made a fully reversible version of our model, including the inverse reactions for ATP hydrolysis. ... -
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RElt
calculates overlap, kinetic integrals for numerical atomic orbitals.
The efficient algorithm calculating the overlap and the kinetic integrals for the numerical atomic orbitals is implemented. The described algorithm exploits the properties of the prolate spheroidal coordinates. The overlap and the kinetic integrals in R^3 are reduced to the integrals over the rectangular domain in R^2, what substantially reduces the complexity of the problem. We prove that the integrand over the rectangular domain is continuous and does not have any slope singularities. ... -
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Kinetic Model Builder
GUI for building, simulating and optimizing kinetic models.
A 3D graphical interface for building, simulating and optimizing Markov kinetic models in response to user defined time dependent stimuli. Models can be represented as either states and connecting transitions or interacting allosteric elements (see http://dx.doi.org/10.1085/jgp.201411183). Model parameters can be optimized by fitting model responses to user data. Optional user defined constraint equations for model parameters are parsed with EigenLab (https://github.com/marcel-goldschen-ohm/EigenLab). ... -
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diauxic growth model ensemble
An ensemble of models showing diauxic growth behavior
...The models in the ensemble can be categorized according to regulatory, stoichiometric, and physiological constraints and differ from each other on only a single aspect. We distinguish four groups of models: (1) flux balance models that only define reaction kinetics for substrate uptake and by-product excretion, (2) kinetic models without and (3) kinetic models with regulation on the metabolic and/or genetic level, and (4) resource allocation models. -
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Pi-Space Physics Software
A Physics Theory for Unifying Classical, Quantum and Relativistic Phys
This is the Official Software of the Pi-Space Physics Theory created by Martin Brady. I have a B.Sc. in Computer Applications from Dublin City University and I have an interest in software implementation of Physics. The Theory includes a Quantum Theory of Gravity as well as a reworking of Classical versions of Newton's Formulas. The Theory is based on a set of Relativistic Diagrams called Pi-Space Diagrams for those new to the Theory. License :: Creative Commons Attribution... -
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...Please find the latest version written in Python at http://reactionmechanismgenerator.github.io To see the website o the old Java version of RMG, visit http://rmg.sourceforge.net RMG (Java version) is an automatic chemical reaction mechanism generator that constructs kinetic models composed of elementary chemical reaction steps using a general understanding of how molecules react (currently limited to C, H, O, and S atoms).
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OptFerm
A computational platform to study fermentation processes
...This tool is focused in optimizing a feeding trajectory to be fed into a fed-batch bioreactor and to calculate the best concentration of nutrients to initiate the fermentation. Also, contains a module for the estimation of kinetic and yield parameters, allowing the use of experimental data obtained from batch or fed-batch fermentations to reach the best possible model setup. -
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Glycosylation Microviewer
An application create, simulate and adjust N-linked glycosylation.
...The model used in the application is based on two significant papers: 1.1997 Pablo Umana, James E.Bailey A Mathematical Model of N-linked Glycoform Biosynthesis. 2.2005 Frederick J.Krambeck, Michael J.Betenbaugh A Mathematical Model of N-linked Glycosylation. The application allow to simulate the network in dynamic form with various ODE solvers(Euler, Runge-Kutta etc). Genetic Algorithm is used to adjust the kinetic parameters of Michaelis-Menten equations in glycosylation reaction network. A dynamic plot is supplied to show the value of mole amout and mole fraction of various glycoform. Thanks to Alexey Balakin and Alessandro Presta. Alexey Balakin supply mathgl(https://sourceforge.net/projects/mathgl) that make the implementation of dynamic plot in this application easily. ... -
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RNA-DM
RNA Dynamics Miner
Recently, RNA dynamics - the complex conformational transition and hierarchical free-energy landscape of RNAs has been demonstrated to be critical in understanding RNA functions and relevant biological processes. RNA Dynamics Miner (RNA-DM) is a bioinformatics tools desigined to mine the kinetic landscpae for a given RNA sequence or a large RNA dataset.
