Search Results for "igv"
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Showing 7 open source projects for "igv"
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RawTherapee
A powerful cross-platform raw photo processing program
RawTherapee is a powerful, cross-platform raw photo processing application targeted at enthusiast and semi-professional photographers who want deep control over image development. It’s written primarily in C++ with a GTK+ front-end, providing a high-precision 32-bit floating-point processing engine along with multiple demosaicing algorithms and advanced color-management features. The program supports a very wide range of camera raw formats (via a patched version of dcraw) as well as non-raw... -
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miRge3
Comprehensive analysis of small RNA sequencing data
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User Interface (GUI). For more details refer to documentation link below. -
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GNomEx
A Genomic LIMS and Data Repository
...Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing, Affy and Agilent Microarrays, Sequenom MassArray and Bioanalyzer. GNomEx is a web application with a Flash client user interface and a Java backend that runs on Apache Tomcat. ... -
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FishingCNV
Copy number variation (CNV) detection in exome sequencing data
FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases. -
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Intrepid Bioinformatics' Integrative Genomics Viewer (IGV) modifications designed to integrate Intrepid's repository with the Broad Institute's IGV visualization tool.
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Intrepid Bioinformatic's Integrative Genomics Viewer (IGV) modifications for viewing NGS files on IGV with data located on remote servers, accessed by web services.
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IGV allows you to easily create and edit a graph, automatically places the graph on the plane (!!!), search for the minimal path (+coloring vertices), search center (+coloring), search vertices degree, search vertices eccentricity and others.
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