GenTaxo
A perl script for comparative genomics
Requirements:
Bioperl
NCBI blast+
Usage:
perl GenTaxo.pl -ani_files (files separeted by , without space) -aai_files (files separeted by , without space) -evalue (default: 0.001) -threads (default: 1) -verbose (default: False)
-min_id (default: 30) -min_cov (default: 0.7) -min_seqs (default: 100) -karlin_files (files separeted by , without space) -output (default: Karlin_Distances.tsv) -verbose (default: False)