Showing 5 open source projects for "gale"

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  • 1

    chipexo

    model based analysis of ChIP-exo data

    Here we developed a novel analysis framework named MACE (model-based analysis of ChIP-exo) dedicated to ChIP-exo data analysis. MACExo has the following four steps: 1) sequencing data normalization and bias correction; 2) signal consolidation and noise reduction; 3) single nucleotide resolution border detection using Chebyshev Inequality; and 4) border matching using Gale-Shapley’s stable matching algorithm. When applied to yeast Reb1 and human CTCF ChIP-exo data, MACE is able to define TFBSs...
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  • 2

    CCH

    A genetics tool that identifies genomic regions of shared ancestry

    ... If you use CCH please cite: Levine AP, Connor TM, Oygar DD, Neild GH, Segal AW, Maxwell PH, Gale DP. Combinatorial Conflicting Homozygosity (CCH) analysis enables the rapid identification of shared genomic regions in the presence of multiple phenocopies. BMC Genomics. 2015 Dec;16(1):1360. doi: 10.1186/s12864-015-1360-4. Epub 2015 Mar 10.
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  • 3

    Chocoholic

    Game solver for Chomp

    Chomp is a game invented by D Gale in 1974. It can be played in arbitrary-sized arenas, so there is no single solution, but a game of any size is a proper subset of all larger games. This project produces a solution for any arena you select, provided you have time and disk space enough.
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  • 4
    Praya is a window to all your messages. It ships with many protocols, including DICT, IRC, gale, Maildir, a timer, and Yahoo! Pager. Praya is easily extendible. Adding new protocols is relatively straightforward. It has a modular architecture which makes
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  • AlertBot: Website Monitoring of Uptime, Performance, and Errors Icon
    AlertBot: Website Monitoring of Uptime, Performance, and Errors

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  • 5
    The project has moved to SourceForge due to BerliOS being closed by the end of the year. Please go to: https://sourceforge.net/projects/gale-opengl/
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