Showing 20 open source projects for "electrostatic"

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  • 1
    This program computes Density Derived Electrostatic and Chemical (DDEC) net atomic charges and atomic multipoles for periodic and nonperiodic systems. These chemically meaningful net atomic charges approximately reproduce the electrostatic potential.
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    Downloads: 51 This Week
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  • 2
    We developed IBEIP, an intelligent and accurate tool for identifying B cell dominant epitope regions based on Ag-nAb complex crystal structures from PDB database. During epitope mapping, IBEIP analyzes four molecular interactions (van der Waals forces, buried surface area, hydrogen bonds, and electrostatic interactions) between antigen and antibody complexes to ensure accuracy. IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. IBEIP is also applicable to analyzing high-mutant antigens and complex epitope structures that span adjacent monomers. ...
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    Downloads: 25 This Week
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  • 3
    luscus

    luscus

    molecular editor and viewer

    ...The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus can also visualize dipole moments, normal modes, molecular orbitals, electron densities and electrostatic potentials. In addition, simple geometrical objects can be rendered in order to point out a geometrical feature or a physical quantity. The program is developed as a graphical interface for MOLCAS program package, however it's adaptive nature makes possible using luscus with other computational program packages and chemical formats. ...
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    Downloads: 20 This Week
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  • 4
    ...Zgoubi simulates beam dynamics and polarization in a variety of accelerators (storage ring, synchrotron, cyclotron, betatron, microtron, FFAG, multi-pass ERL, etc) and optical systems (beam lines, magnetic and electrostatic optical components, time-of-flight and mass spectrometers, etc). The code includes built-in fitting procedures with a wide variety of constraints; stochastic SR energy loss; the tracking of synchrotron radiation (SR) Poynting vector; space charge models; various Monte Carlo procedures, etc. Contact: francoisgmeot@gmail.com Documentation (History of accelerators that zgoubi deals with, theory, tutorials): https://link.springer.com/book/10.1007/978-3-031-59979-8 https://link.springer.com/book/10.1007/978-3-031-16715-7, Chap. 14.
    Downloads: 6 This Week
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  • 5
    Finite Element Method Magnetics

    Finite Element Method Magnetics

    Finite element analysis of electromagnetic devices

    Solves low frequency magnetic, electrostatic, heat flow, and current flow problems on 2D and axisymmetric domains via the finite element method.
    Downloads: 38 This Week
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  • 6

    Polluted gases Estimator

    Create, estimate and analyses gas pollutants and the possible costs

    The SPS machines are not designed to filter the particulates to be of acceptable size, level or concentration, unlike Wet Scrubbers, Electrostatic Precipitators, Diesel Particulate Filter DPF etc. The reality is that finest and ultra-finest Particulates tends to behave like gas rather than a gas-solids mixture or simply can be transported by vapour. Is the reason why many filtering technologies are ineffective. However, SPS technology is post-combustion system or last stage of production, which results in packaged CO2 or any other gases, without worrying about gas dilution and intrusion processes which more complicated and costly also are not well investigated, that is a setback for many CO2 technology. ...
    Downloads: 0 This Week
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  • 7

    tabipb

    A treecode-accelerated boundary integral Poisson-Boltzmann solver

    TABI (treecode-accelerated boundary integral) solves the linear Poisson-Boltzmann equation. The solver employs a well-conditioned boundary integral formulation for the electrostatic potential and its normal derivative on the molecular surface, which is triangulated and the integral equations are discretized by centroid collocation. The linear system is solved by GMRES iteration and the matrix-vector product is carried out by a Cartesian terraced which reduces the cost from O(N^2) to O(N*logN), where N is the number elements. ...
    Downloads: 0 This Week
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  • 8

    ANT.Gaussian

    Quantum transport code based on Gaussian03/09

    ...Straightforwad use of ANT.G include the computation of the zero-bias conductance (or, alternatively, the electrical current under an applied bias voltage) of a variety of nanoscale systems such as molecular bridges or simply metallic atomic contacts as those created with scanning tunneling microscope or break junction techniques. The use of ANT.G may also be naturally extended to the computation of scanning tunneling spectroscopy and the simulation of scanning tunneling and electrostatic force microscopy.
    Downloads: 0 This Week
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  • 9

    esf

    electrostatic field package

    This is an electrostatic field package for GNU Octave. It contains functions that can calculate capacitance matrix of metal blocks, inductance matrix of metal bounds, impedance matrix of metal dipoles (antennas), and so on.
    Downloads: 0 This Week
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  • 10

    PyParticles

    PyParticles is an opensource particles simulation tool box entirely wr

    ...It also offer a nice looking OpneGL interface or at your preference a Matplotlib based GUI. PyParticles as a forces models implements Gravity, spring, constant force and electrostatic and the user defined vector field force. As a integrations method it includes Euler, Midpoint, Runge Kutta, Störmer Verlet and Leap frog.
    Downloads: 0 This Week
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  • 11

    ApiVizTEP

    Application for Visualization of Target Tissue in Electroporation

    ...The aspect of electrochemotherapy this application allows you to study in particular, is perhaps the most important one. Using analytical methods, ApiVizTEP calculates the electrostatic field generated by up to 6 groups of needle electrodes inserted in tumor and surrounding tissue...
    Downloads: 0 This Week
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  • 12
    Electrostatic properties of DNA
    Downloads: 0 This Week
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  • 13
    OFF-TARGET PIPELINE is a platform intended to carry out a recently introduced chemical systems biology approach for secondary target identification, but may also be useful to other applications in bioinformatics and drug discovery.
    Downloads: 0 This Week
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  • 14
    An analytical generalized Born model to calculate electrostatic solvation energy that accurately reproduces the linearized Poisson-Boltzmann equation. More about this method is explained in J. Phys. Chem. B, 111, 3055-3061 (2007).
    Downloads: 0 This Week
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  • 15
    Sound of Static is a device driver for a directly digitally driven electrostatic loudspeaker.
    Downloads: 0 This Week
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  • 16
    VecMetaFrame is an electrostatic fields distributed simulator based on PVM, which provides a client-server model, distributed/parallel fields computation and various types of visualizations and simulation features.
    Downloads: 0 This Week
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  • 17
    fieldEB is an electrostatic and magnetostatic simulator. With fieldEB you can put charges or current on a 2D space. Electrostatic field and magnetostatic can be drawn.
    Downloads: 0 This Week
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  • 18
    Chomik is a visualisation software for graphical representation of molecular electrostatic potential (MEP) - an important source of informations about chemical reactivity or biological activity of a compound. Chomik uses Kohonen network (SOM) to gen
    Downloads: 0 This Week
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  • 19
    Gnome Field is a Open Source program which can calculate the electrostatic fields and potential of any custom charge or electrode configuration.
    Downloads: 0 This Week
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  • 20
    repeat_esp

    repeat_esp

    Repeating electrostatic potential extracted atomic charges

    REPEAT provides a best fit to an ab initio electrostatic potential (ESP) by solving a system of linear equations to minimize an error functional between the DFT ESP and an esp derived from point charges located at atomic centres.
    Downloads: 0 This Week
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