Search Results for "docking software"
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Showing 50 open source projects for "docking software"
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DockPanel Suite
The Visual Studio inspired docking library for .NET WinForms
Microsoft first introduced the docking panel layout in Visual Studio .NET (2002), and soon it became popular in application design. Many commercial .NET component vendors started to provide docking libraries initially, but there was no good free and open source alternative until WeiFen Luo released DockPanel Suite (DPS for short) on SourceForge.net in 2006. After an 18 month hiatus, the project has been resurrected and is now being actively developed on GitHub. -
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LNPopupController
LNPopupController is a framework for presenting view controllers
... UIViewController. Each view controller can present a popup bar, docked to a bottom view. For UITabBarController subclasses, the default docking view is the tab bar. For UINavigationController subclasses, the default docking view is the toolbar. For other classes, the popup bar is presented at the bottom of the screen. View controller subclasses can provide their own docking views. -
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Ant Design Pro
Out-of-box UI solution for enterprise applications
An out-of-box UI solution for enterprise applications as a React boilerplate. Ant Design Pro is a production-ready solution for admin interfaces. Built on the design principles developed by Ant Design, this project introduces higher level components; we have developed templates, components, and a corresponding design kit to improve the user and development experience for admin interfaces. Ant Design Pro is a front-end scaffolding. By default, readers have already understood some basic... -
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GUI Turbo Assembler (TASM)
An essential 32-64bit localized IDE for Assembly Language with Debuger
GUI Turbo Assembler is an essential IDE for assembly language programming. It includes Borland Turbo Assembler (TASM), Turbo Linker, Turbo Debugger and DOSBox for writing both 16-bit and 32-bit programs in assembly language. GUI Turbo Assembler provides a rich set of features, encompassing fundamental file operations and advanced capabilities such as line numbering, syntax highlighting, code folding, docking, and theme personalization. The interface is highly adaptable, empowering users... -
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PyRx - Virtual Screening Tool
Virtual Screening software for Computational Drug Discovery
PyRx is a Virtual Screening software for Computational Drug Discovery that can be used to screen libraries of compounds against potential drug targets. PyRx enables Medicinal Chemists to run Virtual Screening from any platform and helps users in every step of this process - from data preparation to job submission and analysis of the results. While it is true that there is no magic button in the drug discovery process, PyRx includes docking wizard with easy-to-use user interface which makes... -
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Win32++ is a C++ library used to build windows applications. It is a simple, open source alternative to MFC. Win32++ supports the C++ compilers from GNU and Microsoft. It is an ideal starting point for anyone learning to program for windows, but also caters for the needs of professional developers.
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MOLS 2.0 is a free and open-source software package for peptide modeling and protein-ligand docking. Authors: Dr. D. Sam Paul, Dr. S. Nehru Viji, Dr. P. Arun Prasad, Dr. K. Vengadesan, Dr. N. Gautham. If you use MOLS 2.0 for publication, please cite - D. Sam Paul, N. Gautham, MOLS 2.0: software package for peptide modeling and protein–ligand docking, Journal of Molecular Modeling 22 (2016) 1–9. Publications related to MOLS 2.0: 1. Vengadesan, K. & Gautham, N. Enhanced sampling...
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AutoDockParser
A tool for efficient processing of Docking results
AutoDock Suit is one of the most popular software for performing Molecular Docking and Virtual Screening. This suit offers two programs AutoDock and AutoDock Vina. AutoDock provides its output as Docking Log Files (DLG files), while the latter outputs in pdbqt format. Post-processing of these results has long remained a manual job and hence various protocols and workflows are designed that are user-specific. Manual processing of these results for subsequent interaction analysis has remained... -
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ASAF - Another Swing App Framework
an OSGi-based Swing Application Framework
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Eddy
An editor for the specification of Graphol ontologies
Eddy is a graphical editor for the specification and visualization of Graphol ontologies. Eddy features a design environment specifically thought out for generating Graphol ontologies through ad-hoc functionalities. Drawing features allow designers to comfortably edit ontologies in a central viewport area, while two lateral docking areas contains specifically-tailored widgets for editing, navigating and inspecting open diagrams. Eddy is equipped with design-time syntax validation... -
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Jupyter Dock
Perform molecular docking protocols interactively
... was to provide a set of pythonic protocols for molecular docking. Nonetheless, there is a dearth of docking tools in Python for all of the steps and protocols (i.e. pocket search for blind docking). Furthermore, the majority of well-known and widely used molecular docking software have been developed as stand-alone executables or as components of software suites. -
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DockStream
A Docking Wrapper to Enhance De Novo Molecular Design
DockStream is a docking wrapper providing access to a collection of ligand embedders and docking backends. Docking execution and post hoc analysis can be automated via the benchmarking and analysis workflow. The flexilibity to specifiy a large variety of docking configurations allows tailored protocols for diverse end applications. DockStream can also parallelize docking across CPU cores, increasing throughput. DockStream is integrated with the de novo design platform, REINVENT, allowing one... -
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ADFRsuite
Automated docking software tools from the Sanner lab at Scripps
the ADFRsuite provides a self contain python-based software environment with various tools for automated docking. visit ccsb.scripps.edu/adfr for more info -
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GWOVina 1.0
The Hybrid Grey Wolf Optimization for Protein-Ligand Docking
... receptor docking, GWOVina is also competitive in pose ranking. Its success rate is higher than AutoDock Vina, but similar to AutoDockFR. https://cbbio.online/software/gwovina/index.html -
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Generic IDE
Generic IDE framework created in winform
Generic IDE framework created in winform -
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PSOVina 2.0
The Hybrid Particle Swarm Optimization for Protein-Ligand Docking
A fast docking tool based on the efficient optimization algorithm of Particle Swarm Intelligence and the framework of AutoDock Vina. Based on the initial PSO implementation, our PSOVina method has undergone several important improvements to enhance the docking accuary and achieve remarkable efficiency as compared to the original AutoDock Vina. https://cbbio.online/software/psovina/index.html -
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Fragment-based Peptide Docking
Fragment-based Peptide Docking
A fortran based fragmentizing-docking-remerging program for long peptides (10-16 amino acids) docking simulations. This program is compiled by intel fortran at OpenSUSE 64-bits. Designed for 4GPU servers. NOTE: AMBER software packages, AMBER Tools and pmemd.cuda must be normally installed to fully operate this program. However you can still sample massive initial structures (500k~2m peptide conformations) without AMBER. Reference: http://pubs.rsc.org/en/content/articlelanding/2017/cp... -
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rDock
A Fast, OpenSource Program for Docking Ligands to Proteins and N.Acids
rDock is a fast and versatile Open Source docking program that can be used to dock small molecules against proteins and nucleic acids. It is designed for High Throughput Virtual Screening (HTVS) campaigns and Binding Mode prediction studies. rDock is mainly written in C++ and accessory scripts and programs are written in C++, perl or python languages. The full rDock software package requires less than 50 MB of hard disk space and it is compilable in all Linux computers. Thanks to its design... -
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eddy
An editor for the specification of Graphol ontologies
Eddy is a graphical editor for the specification and visualization of Graphol ontologies. Eddy features a design environment specifically thought out for generating Graphol ontologies through ad-hoc functionalities. Drawing features allow designers to comfortably edit ontologies in a central viewport area, while two lateral docking areas contains specifically-tailored widgets for editing, navigating and inspecting open diagrams. Eddy is equipped with design-time syntax validation... -
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RsDesign.Controls
WinForms Controls & Docking Forms
Controls are working on operating systems Windows (on the platform. NET Framework 4.0). All components support visual styles: Visual Studio 2010, Office 2007, Office 2010. You can create and connect to other styles. In a set of more than 48 components including DataGridView and Docking Forms. -
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Icarus Scene Engine
3D .NET engine for Windows, Linux, Mac
Icarus Scene Engine is a cross-platform, CLS-compliant 3D framework, integrating open source APIs into a cohesive all-open-source, all .NET solution. For Windows, MacOSX & Linux. Uses OpenTK, OpenGL, OpenAL APIs for graphics and audio. Runs on Mono/.NET. Links to FFMpeg for streaming video, and FreeType as a temporary conversion mod to bring fonts into a native XML format. Binary builds of Icarus will be infrequent, roughly every 18 months or so, the GIT code updates regularly on a... -
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Drombler
Drombler FX is a modular RCP for JavaFX based on OSGi and Maven.
Drombler FX is a modular Rich Client Platform for JavaFX based on OSGi and Maven (POM-first). The artifacts are available from Maven Central. Have a look at the Wiki for more information. -
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notepas
Advanced multiplatform text editor for developers
Notepas is a fast native multiplatform text editor written in Lazarus and can be compiled for multiple platforms and widget sets using the advanced native Free Pascal Compiler. Aimed towards developers it is equipped with some functions usually not found in other text editors and introduces a couple of new exclusive features. -
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LiS Chemical Informatics
Gerald Lushington's chemical informatics development
This site distributes open source chemical informatics tools developed by Gerald Lushington (principal consultant at LiS Consulting). Software from this site may be used freely and revised as is useful, with the proviso that credit be given in the form of citation or link back to http://gerrylushington.users.sourceforge.net/. The latest tool deposited here (see Code directory) is designed to graphically render (in PyMol) spatial affinity trends derived from molecular docking simulations...