Search Results for "clinical"
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Showing 203 open source projects for "clinical"
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SleepFM-Clinical
Improve human sleep through scientifically
SleepFM-Clinical is a specialized version of SleepFM designed for clinical and research environments, offering an adaptive audio modulation system aimed at improving human sleep through scientifically guided soundscapes. Rather than simply playing static white noise or ambient tracks, it uses a closed-loop, frequency-modulated framework that responds to user-specific sleep patterns and physiological signals to tailor sound in ways that can enhance sleep onset and depth. ... -
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MedGemma
Collection of Gemma 3 variants that are trained for performance
...It includes multiple variants such as a 4 billion-parameter multimodal model that can process both medical images and text and a 27 billion-parameter text-only (and multimodal) model that offers deeper clinical reasoning and understanding at higher capacity, making it suitable for complex tasks like medical question answering, summarization of clinical notes, or generating reports from radiology images. The multimodal versions pair a SigLIP-based image encoder pre-trained on diverse de-identified medical imaging data. -
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MedgeClaw
Open-source AI research assistant for biomedicine
MedgeClaw is a specialized AI-powered research assistant tailored for biomedical and scientific workflows, built on top of OpenClaw and Claude Code architectures. It integrates a large library of domain-specific skills, enabling it to perform complex analyses in areas such as genomics, drug discovery, and clinical research. The system connects conversational interfaces with computational environments, allowing users to initiate research tasks through messaging platforms while the backend executes analyses using tools like R and Python. It includes a real-time dashboard that displays progress, generated code, and outputs, providing transparency throughout the research process. ... -
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FL4Health
Library to facilitate federated learning research
FL4Health is a Vector Institute toolkit for building modular, clinically-focused FL pipelines. Tailored for healthcare, it supports privacy-preserving FL, heterogeneous data settings, integrated reporting, and clear API design. -
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MING
A large-scale model of medical consultation in Chinese
...The project focuses on building a healthcare-focused conversational system capable of responding to medical questions, analyzing case descriptions, and guiding diagnostic reasoning. It is trained using medical instruction tuning so that the model can understand patient symptoms and respond with structured explanations and clinical suggestions. One of its primary goals is to simulate a multi-round medical consultation process, allowing the system to ask follow-up questions before offering diagnostic recommendations. This interactive capability makes it suitable for conversational health applications, patient triage scenarios, and educational demonstrations. ... -
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OpenClaw Medical Skills
The largest open-source medical AI skills library for OpenClaw
OpenClaw-Medical-Skills is an open-source library that provides a large collection of specialized medical capabilities designed for the OpenClaw AI agent ecosystem. The project organizes domain-specific “skills” that enable autonomous agents to perform tasks related to biomedical research, healthcare analysis, and clinical data interpretation. Each skill is packaged as a modular component that can be integrated into an OpenClaw-based AI assistant, allowing the agent to perform expert-level reasoning and workflows in medical contexts. Instead of relying on general-purpose language model responses, the repository equips AI agents with structured instructions and tools tailored to medical knowledge and datasets. ... -
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OpenMed
Open source healthcare AI
OpenMed is an open-source healthcare AI and medical NLP toolkit designed to turn clinical text into structured insights using transformer-based models and production-oriented interfaces. Its core purpose is to provide specialized medical entity extraction, PII detection and de-identification, assertion-aware analysis, and related healthcare text processing capabilities without locking users into a proprietary platform. -
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Synthea Patient Generator
Synthetic Patient Population Simulator
...Synthetic data establishes a risk-free environment for Health IT development and experimentation. This includes the evaluation of new treatment models, care management systems, clinical decision support, and more. -
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LangExtract
A Python library for extracting structured information
LangExtract is a Python library developed by Google that leverages large language models (LLMs) to extract structured information from unstructured text—such as clinical notes, research papers, or literary works—based on user-defined instructions. It is designed to transform free-form text into reliable, schema-constrained data while maintaining traceability back to the source material. Each extracted entity is precisely grounded in its original context, allowing visual inspection and validation via automatically generated interactive HTML visualizations. ... -
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Scientific Agent Skills
A set of ready to use Agent Skills for research, science, engineering
...It supports any AI agent compatible with the Agent Skills standard, including tools such as Cursor, Claude Code, Codex, and Gemini CLI. The repository includes 135 skills across scientific domains such as genomics, cheminformatics, clinical research, medical imaging, machine learning, physics, materials science, geospatial analysis, and scientific writing. Each skill provides curated documentation, examples, best practices, and integration guidance so agents can execute complex workflows more reliably. It is especially useful for researchers who need AI assistance with databases, Python libraries, literature review, data analysis, and scientific communication. ... -
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MONAI
AI Toolkit for Healthcare Imaging
The MONAI framework is the open-source foundation being created by Project MONAI. MONAI is a freely available, community-supported, PyTorch-based framework for deep learning in healthcare imaging. It provides domain-optimized foundational capabilities for developing healthcare imaging training workflows in a native PyTorch paradigm. Project MONAI also includes MONAI Label, an intelligent open source image labeling and learning tool that helps researchers and clinicians collaborate, create... -
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OpenHealth
AI health assistant for private, local data-driven insights mgmt
OpenHealth is an AI-powered health assistant designed to help individuals take control of their personal health data and better understand their overall well-being. It works by aggregating various types of health information, such as clinical records, wearable device data, and self-reported inputs, into a unified and structured format. OpenHealth then uses large language models to enable contextual conversations, allowing users to interact with their own health data in a more intuitive and personalized way. A strong emphasis is placed on privacy, as the platform can run entirely locally, ensuring that sensitive medical data does not need to leave the user’s environment. ... -
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ITK-SNAP is a tool for segmenting anatomical structures in medical images. It provides an automatic active contour segmentation pipeline, along with supporting manual segmentation toolbox. ITK-SNAP has a full-featured UI aimed at clinical researchers.
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GBC-preoperative-T-Staging-prediction
Preoperative staging predictions
Thank you for using the GBC preoperative T-Staging prediction v1.0! This application is based on a multimodal fusion model (FWM) that integrates clinical features, radiomics, and deep learning characteristics to provide preoperative staging predictions. Below is a detailed user manual to help you maximize the potential of this tool. -
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SecurePose
Automated Face Blurring, Kinematics Extraction and Leg dystonia Dx
SecurePose, an open-source software, automates face blurring, human movement kinematics extraction and leg Dystonia diagnosis. The software provides clinical-grade face blurring with minimal manual effort. It was validated on videos recorded in clinical settings. The tool employs pose estimation to track and uniquely identify individuals, recognize patients, perform effective face blurring, and identify leg dystonia. SecurePose surpassed six existing methods in automated face detection and blurring and outperformed human performance in leg dystonia identification. ... -
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OpenEMR is an open source medical practice management application (EHR EMR PMS) featuring fully integrated electronic health records, scheduling, electronic billing, internationalization, free support, a vibrant community, and a whole lot more.
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OSCARMcMaster
open source web-based Electronic Medical Record (EMR) system
This site contains archived code for the Open-Source Clinical Application Resource ("OSCAR") electronic medical record. While some may use OSCAR's open-source code as the basis of EMR software they offer, the "OSCAR" or "OSCAR McMaster" name is used only by those who affiliated with McMaster and uphold the following standards: *Transparency – code repository published by McMaster, accessible to all, and WAR file downloadable from McMaster website *Collaboration – opportunities to work together on both code and deployment *Quality – compliance with regulatory requirements and security best practices *Ethical Data Stewardship – affirmation of clinicians as Health Information Custodians (HIC) with commitment to support HIC’s access to data, and to use data solely as authorized by a HIC. ... -
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DxTonia
A tool for detecting the presence of leg dystonia from videos.
...The software provides an automated solution for detecting leg dystonia in children with cerebral palsy (CP), by using artificial intelligence. The software has been verified on two datasets and achieved higher accuracy than routine clinical care. Stay tuned for the improved version. Note: Currently only works on Windows PC with Nvidia GPU. Soon, mac and Linux CPU only version will be released. The requirment files are in old-version_scripts folder. Instructions to use DxTonia https://www.rishabh-bajpai.com/dxtoniainstallation https://www.medrxiv.org/content/10.1101/2024.10.15.24315574 -
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OpenClinic GA
Open Source Integrated Hospital Information Management System
OpenClinic GA is an open source integrated hospital information management system covering management of administrative, financial, clinical, lab, x-ray, pharmacy, meals distribution and other data. Extensive statistical and reporting capabilities. OpenClinic GA and OpenClinic GMAO are owned by Frank Verbeke, MD, PhD at Post-Factum BV (https://www.post-factum.be) -
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SPINA
Structure parameter inference approach for endocrine feedback control
...It delivers the secretory capacity of pancreatic beta cells (SPINA-GBeta), an estimate for the insulin receptor amplification (SPINA-GR) and a static disposition index as a measure for the loop gain of the feedback loop (SPINA-DI). Both implementations of SPINA have been validated in more than 50 clinical studies based on large cohorts. -
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Obsidian MEDILIG
Obsidian MEDILIG (Medical Life Guard) App Local-First Offline-First
Obsidian MEDILIG (Medical Life Guard): An easy-to-use, flexible, secure, cross-platform medical knowledge management system for patient's Electronic Health Record (EHR) that is built on top of Obsidian software application for the design, implementation and use of autonomous, multilingual, clinical documents from primary care to continuing care. -
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audiometry_trainer
Software for practicing clinical audiometry and clinical masking
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis function and beautiful operation interface of HiPlot (https://hiplot.cn), which I developed based VUE.js and Node.js, etc. -
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123VCF
An Intuitive and Efficient Tool for VCF file filtration
123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand. It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran -
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SDC
SDC facilitates development of dist. systems of medical devices.
...It is based on the upcoming SDC standard, which is specified by the IEEE in IEEE Std 11073-20702-2016 (Point-of-care medical device communication Part 20702: Medical Devices Communication Profile for Web Services), IEEE Std 11073-10207-2017 (Point-of-care medical device communication Part 10207: Domain Information and Service Model for Service-Oriented Point-of-Care Medical Device Communication), and P11073-20701 (IEEE Draft Standard for Service-Oriented Medical Device Exchange Architecture & Protocol Binding). The SDC standard has the goal to meet increasing demand for medical device interoperability in an Integrated Clinical Environment (ICE), see also ASTM F2761-1:2009. OpenSDC is not intended to be used in clinical trials, clinical studies, or in clinical routine.