Search Results for "burrow-wheeler"
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Showing 27 open source projects for "burrow-wheeler"
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Lung cancer screening panel
Software for predicting probability of lung cancer from VCF file
...The software provided here can be used to predict the probability of cancer from peripheral blood samples. The sequencing data from the blood sample should be first aligned to the GRCh38 reference genome using the Burroughs-Wheeler aligner and variants called using the Mutect2 for variant calling. The resulting VCF file is used as input to the software. Output: Predicted probability of cancer. -
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Hyperledger Burrow
A permissioned Ethereum smart-contract blockchain node
Hyperledger Burrow is a permissioned Ethereum smart-contract blockchain node. It executes Ethereum EVM and WASM smart contract code (usually written in Solidity) on a permissioned virtual machine. Burrow provides transaction finality and high transaction throughput on a proof-of-stake Tendermint consensus engine. Burrow is a fully-fledged blockchain node and smart contract execution engine -- a distributed database that executes code. -
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Inductor Turns Calculator
Calculate number of turns needed to produce a coil with given L
Avoid by-guess-and-by-golly use of turns-to-inductance calculators to determine number of turns to yield the inductance you need. Using the inversion of Wheeler's formula for inductance of single-layer coils, calculates the number of turns required to produce a specified inductance. Specify desired inductance, coil radius, and winding pitch. -
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Bzip2 for Windows
A block-sorting file compressor, v1.0.6 for Win-32
Bzip2 compresses files using the Burrows-Wheeler block sorting text compression algorithm, and Huffman coding. Compression is generally considerably better than that achieved by more conventional LZ77/LZ78-based compressors, and approaches the performance of the PPM family of statistical compressors. by Julian Seward. -
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bzip2
A file compressor/decompressor utility
bzip2 is a free and open-source file compression program that uses the Burrows–Wheeler algorithm. It only compresses single files and is not a file archiver. It is developed and maintained by Julian Seward. Seward made the first public release of bzip2, version 0.15, in July 1996. The compressor's stability and popularity grew over the next several years, and Seward released version 1.0 in late 2000. Official website: https://www.sourceware.org/bzip2/ Source: https://sourceware.org/pub/bzip2/?... -
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NMRspectroscopy is a package providing ease in installing some popular tools regarding proteins' analysis. It also provides a GUI interface for the tools.
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BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.
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INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
...OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data. -
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ParaBWT - parallel BWT construction
a parallel and space-efficient Burrows-Wheeler transfrom constructor
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xxteac - XXTEA Encrypter/Decrypter
xxteac - XXTEA Encrypter/Decrypter
This xxteac program utilizes the "Corrected Block TEA" encryption/decryption algorithm by Roger Needham and David Wheeler. The original algorithm has been slightly modified to allow arbitary length passwords / password files. -
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staticcomp
Staticcomp - a file archiver
Staticcomp is a file archiver. It is a program using library libsc for compressing/decompressing files. Libsc uses compression method based on Burrows-Wheeler transform. For GST stage there are methods MTF, MTF-1, MTF-2, Timestamp, IFC and WFC. -
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HarryPotterMapMC
Świat Harry'ego Pottera w Minecraft!
...- Hogwart - Ministerstwo Magii / Ministry of Magic - Ulica Pokątna / Diagon Alley - Ulica Śmiertelnego Nokturnu / Knockturn Alley - Dziurawy Kocioł / The Leaky Cauldron - Londyn / London (Grimmauld Place, dworzec King's Cross / King's Cross Railway Station) - Nora / The Burrow - Dolina Godryka / Godric's Hollow - Little Hangleton - Little Whinging - dwór Malfoy'ów / Malfoy Manor - Muszelka / Shell Cottage - Spinner's End (dom Severusa Snape'a / home of Severus Snape) - Hogsmeade - Azkaban - Klinika magicznych chorób i urazów szpitala świętego Munga / Saint Mungo's Hospital for Magical Maladies and Injuries - Nurmengard - Durmstrang, Beuxbatons (We don't use trademarks "Harry Potter", "Hogwart" and other for profit) (Nie używamy znaków handlowych "Harry Potter", "Hogwart" i innych w celach zarobkowych) -
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Burrow-owl is a software package for visualizing multidimensional nuclear magnetic resonance (NMR) spectra, with an emphasis on spectra used in macromolecular structure determination.
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CUSHAW: CUDA-based Short Read Alignment
the first aligner introducing a complete paired-end alignment on GPUs
CUSHAW is a CUDA compatible short read aligner to large genomes, such as the human genome, based on the Burrows Wheeler transform. -
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This software is used to grab articles from a wordpress 'master site' and post articles back to a bunch of wordpress sister sites. This is mostly used by SEO professionnals to generate backlinks. This software is not a wordpress plugin!
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The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
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The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
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Secure Addressbook is based on the JavaScript implementation of Wheeler & Needham's Block TEA (Tiny Encryption Algorithm) by Chris Veness. It allows maintaining secure records even the on shared hosting server, as data en/decrypted at browser only.
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Taglib Windows port of the "TagLib Audio Meta-Data Library" originally written by Scott Wheeler and others at the KDE project. Original project page: http://developer.kde.org/~wheeler/taglib.html source is in cvs as module "taglib"
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A side-scrolling real-time strategy game, with the ability to burrow beneath your enemies. The side scroll gives a unique perspective not seen in RTS's.
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The Tiny Encryption Algorithm (TEA) was developed by David Wheeler and Roger Needham at the Computer Laboratory of Cambridge University. The variant used was developed by David Wagner. TEACrypt 80x86 is the porting of this algorithm to the 80x86 platform
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Creates a persistent and resilient TCP/IP tunnel between two hosts over which arbitrary TCP services can be routed.
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Help implement an industrial strength Burrows-Wheeler transform compressor! Initial release covers block-sort, MTF coding, RLE coding, Huffman coding
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This is an academic project. A library and a sample program will be developed, that will implement the Burrows-Wheeler compression algorithm, using C++ and templates. This is the same algorithm for BZip.
