Search Results for "plot" - Page 9
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Showing 543 open source projects for "plot"
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MethyMer
Design of specific primer combinations for bisulfite sequencing
MethyMer is a Python-based tool aimed at selecting specific primers for amplification of complete CpG islands. These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome). It also incorporates TCGA CpG methylation... -
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ZeGrapher
Fast and easy to use plotting software.
ZeGrapher is a free and open source software for plotting mathematical objects (functions, sequences, parametric equations) and experimental data on the plane. This software is intended to be as easy to use as possible, suitable for high school students. -
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datasw
datasw, a tool for rapid processing of HPLC-SAXS data.
Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS... -
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AmberAnalysis
Command-line tools for analyzing Amber Molecular Dynamics simulations.
A suite of command-line tools for analyzing chemically relevant features of an Amber Molecular Dynamics simulation. Can detect the position of a planar interface between two substances and plot density relative to that interface for atoms of an arbitrary type, name, charge, or residue. Orientation of three-atom residues (such as water) may be calculated and plotted. Uses parallel processing to detect hydrogen bonds, and can produce a bonding profile. Output files can be displayed as graphs using the included matplotlib python graphing script. -
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MusicDNA
Experience your favorite music in a unique way
...It does this through the use of the Visualizer Class, and is inspired by paullewis's music-dna. It uses the FFT Data supplied by the Visualizer class of Android , calculating the Amplitude at that exact moment and using this to plot the DNA. MusicDNA fuses the functionality of traditional music players with stunning visualizations. In this way it captivates not only the sense of hearing but the sense of sight as well. MusicDNA's player allows for playing both local music as well as streamed music from SoundCloud. -
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wpf-plot3d
Tool to plot 3d-graphic from an XML, EXCEL or parametrization
"wpf-plot3d" is a tool designed to plot 3-dimensional graphics. It can handle a wide range of graphic types: - Surface: Graphic defined on a Cartesian grid defined via an XML file - Mesh: Graphic defined on a general mesh defined via an XML file - Points: Set of points defined via an XML file - Curve: 3d-curve defined via an XML file - Parametric surface: Parametric surface defined on a cartesian grid - Parametric curve: 3d parametric curve "wpf-plot3d" includes toolboxes: - Camera: Rotation, zoom, ... -
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GTK+ IOStream
GTK+iostream, Data plots, ORB, Neural Networks, WSOLA
...Labels<<"Thanks for reading"; (HBox<<Labels).show(); or even one line : (HBox() << (Labels()<<"Thanks for reading")).show(); Inline code destructs the classes, but leaves the widgets/callbacks operating. This is great for embedded memory saving code. You can also plot like so : Plot figure; figure.plot(x, y, x.size()); Plotting utilises GtkDataBox.sf.net ORB utilises www.zeroc.com Feed forward neural networks with different activation functions. Audio playback/recording and digital signal processing (DSP) - utilising Jack www.jackaudio.org -
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Gnuplot Editor
Interactive gnuplot script editor
Ever needed to tweak a gnuplot script and got annoyed by constantly changing the script file, run gnuplot and display the resulting image? The gnuplot editor generates a preview of the plot for every change you make and quickly allows to show the created image file with a simple keystroke. Lines with errors are highlighted in the code and gnuplot output is shown in a separate widget. In addition it features all basic editor options, syntax highlighting and menu macros for often used gnuplot options. The program is written in python (works with 2 and 3) with a Qt4 user interface, which makes it platform independent (tested in Linux, OS X 10.7 and Windows XP). ... -
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Scattertext 0.2.1
Beautiful visualizations of how language differs among document types
A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding to terms are selectively labeled so that they don't overlap with other labels or points. -
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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KS Workbench
a set of scripts that helps you analyze physiology datasets
For the analyses of patch-clamp data (obtained from Igor/MME) using Python. The following modules are the minimum requirements: - Scipy (including numpy, matplotlib) - h5py In addition, following modules are required in order to fully make use of KS Workbench: - scikit-learn (for some fitting algorithms) - rpy2 (for some statistical analyses) -
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NICOS
Client/Server based experiment and instrument control system
Client/Server based experiment and instrument control system -
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WOW-Auctions-API
Python classes to work with Blizzards API
Auction House API that consumes the official Blizzard's open API Help users to track and monitor AH prices from any World of Warcaft official Server Sends emails when the price of an object is below a treshold predefined by the user. Plot graphs of price evolution -
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matlab2tikz
Converts MATLAB®/Octave figures to TikZ/pgfplots figures
matlab2tikz is a MATLAB(R) script to convert native MATLAB(R) figures to TikZ/Pgfplots figures that integrate seamlessly in LaTeX documents. matlab2tikz supports the conversion of most MATLAB figures, including 2D and 3D plots. For plots constructed with third-party packages, your mileage may vary. Sometimes, MATLAB makes it hard to create matching LaTeX plots by keeping invisible objects around or stretching the plots too far beyond the bounding box. -
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SmartRoot
Semi-automated root image analysis software
SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to... -
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Rrd2Svg
Java classes for converting the collectd's RRD files into the SVG.
$. What it does? The system statistics can be stored into the RRD files by 'collectd' daemon. Please look into: http://oss.oetiker.ch/rrdtool/ https://collectd.org/ On: http://oss.oetiker.ch/rrdtool/rrdworld/index.en.html https://collectd.org/related.shtml the good tools are listed, that can extract the data from the RRD files and can draw the graphs. Rrd2Svg is the tool that draws the graph into the SVG file. To read the RRD files, some of the classes in Rrd2Svg... -
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istiChartLib
C++ Chart Library for wxWidgets
IstiChartLib is one of the simplest c++ library for making chart or graph. It is developed using wxWidgets library. For windows, please use IstiChartLib.zip. For Linux (tested on Ubuntu) use IstiChartLib_Linux.tar.gz. For detailed documentation, please visit www.firagiel.com Password to extract: firagiel -
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BandViewer
Plot band structure and orbitals from outout of CRYSTAL98/03 program
BandViewer 1.01 Written by Yang Wang, 2003.11 A Java software for plotting band structure and crystal orbitals from the outout file of the CRYSTAL98/03 program (http://www.crystal.unito.it). -
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QNANWidgets is a collection of science/engineering oriented Qt Widgets to help in creating sci/eng. applications and include a chart and plot widget. The widgets are easy to use and can be customized in Qt Designer directly.
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SimplEvoFramework
Simple Evolution Framework in standard C
This software implements a general framework for experimenting and demonstration of evolutionary algorithms. The software is implemented in standard C and tries to be as general as possible. The user can implement his/her own fitness function and genotype representation. Since standard C is used the implementation of new fitness functions and gene types require a bit of archaic C programming. -
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MoleculeViewer
View 3D molecule structure and plot 2D density map for CRYSTAL program
A Java sotware for viewing 3D molecule structure and plotting 2D density map. The atomic positions (coordinates) are read from files for the CRYSTAL and GAUSSIAN programs. Supported files: 1. *.xyz (molecule cartesian coordinates file) 2. *.gjf (GAUSSIAN's input file) 3. *.out (CRYSTAL98&2k's scf or properties output file) 4. fort.25 (CRYSTAL98&2k's ECHG(Electronic Charge Density) outpit file with fort.25 format). Molecule's 3D operations: Left drag : free rotate Right drag... -
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PExFInS
Post-GWAS Explorer for Functional Indels and SNPs
The generation of Post-GWAS Explorer for Functional Indels and SNPs (PExFInS) was originated from the observation that high proportion of cis-acting expression quantiative trait loci (cis-eQTLs) emerged in GWAS SNPs and the underexplored status of indel cis-eQTLs for GWAS. We believe that the integration of cis-eQTLs, especially indel cis-eQTLs, with candidate disease-associated variants generated from GWAS could facilitate the identification of causal genes or disease mechanisms. On the... -
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colorview2d
Extendible 2D color plotting tool.
Visualize and analyze 3D data files using 2D colorplots. Inspired by spyview. Written in python. -
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n-chinese-remainders
chinese remainder theorem - progressive solving, n-soln, extras
"chinese remainder" solves a system of equations over modulus quickly. crtwo is an improvement to Mathematica's release. crtwo: solves Chinese Remainder a pair at a time, (uses gcd), yet is still fast. Which means crtwo, unlike text book soln, uses an algorithm to solve or fail one mod equation at a time. showing win or fail of each eqn and solving other sawtooth intersections is possible, due to that. crAll2@crtwo provides n soln near x for CR using width of soln crchart3...
