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DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.
The goal of this project is to formalize, extend, and make freely available code I wrote as a medical student and intern physician that tags and typesets medical data in the formats used by physicians for rapid interpretation.
Quantitative Evalution of Blush: a program to assess myocardial reperfusion on coronary angiograms. This program calculates a value that can be used for risk classification of STEMI patients or as a surrogate endpoint in clinical trials.
ConTextKit is a Java-based implementation of Wendy Chapman's ConText algorithm for annotating the context of medical documents, specifically the negation, temporality, and experiencer.
This software is related to ST-Guide project, an initiative arisen at the Institute of Computing of State University of Campinas (IC-UNICAMP) to solve the practice guideline formalization and implementation problems.
Everything you need to build production-ready agents and models. Access 200+ Google and third-party AI models and tools.
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A simple application designed to help manage your family's medical prescriptions. It allows a family to track prescriptions per person and output them in PDF for dissemination. Hopefully it proves useful, and helps ease the stress of health care.
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
Mirth Connect is an open source cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports.
Software tools for visual psychophysics research. The focus of these tools is amblyopia research, but they can be used in some related visual neuroscience research tasks.
mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).
Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
Elegance, developed by Meng Xu, is a standalone Java application and facilitates the tracing of cell profile through a series of digitized electron micrographic. It is used for recontruction of nervous system of C.elegans male in wired worm lab.
In randomised controlled trials, interventions may have several components. This simple program will enable you to depict any randomised trial graphically It will standardise the construction process and ensure every step is covered. For more information
Collaborative project between academic medical centers to develop rich internet applications. The products of this collaboration will be shared with other institutions.