Search Results for "gnu science" - Page 80
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Showing 11014 open source projects for "gnu science"
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S2O
Converting IBM SPSS files to CDISC ODM
This tool can be used to convert data collections based on IBM SPSS Statistics to the data standard for definition and exchange of clinical trials: CDISC ODM (Operational Data Model). Possible use-cases: - A project is running out of funding and scientific data collection should be performed in free available/open-source data capture systems - Advantages of reliable EDC systems like: Data security (role/right management), backup infrastructure, support of the entire clinical trial... -
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LaserCalc
Simulating optical systems
LaserCalc is an Open Source wxWidgets application for the calculation of optical beam paths and laser resonators based on Gaussian beam matrix optics. In addition beam paths can be optimized to match given beam parameters (mode matching). -
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The Protein Similarity Network
Human protein similarity network used to predict drug safety.
This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do... -
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CLEF
CIRMMT Live Electronics Framework
CLEF is a Max-based modular environment for composition and performance of live electronics, developed at CIRMMT/McGill University. CLEF follows structural design concepts and allows users to rapidly create digital signal processing topologies and control data taking advantage of the provided infrastructure and feature set. CLEF separates domain model from data access layer and user interface, relying on dedicated technologies: OpenSoundControl for data access, Max dictionaries for... -
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QSciPlot
A scientific data plotting program.
QSciPlot is a gnuplot frontend that helps you recording scientific data and plotting it. It is intended to offer similar functionality to IGOR Pro, qtiplot, etc. -
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jAgg
jAgg - Java Aggregation Operations
jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations. -
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A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
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SPA
SPA: a short peptide assembler for metagenomic data
The metagenomic paradigm offers the opportunity to study protein families, and therefore the metabolic and functional potential, of the constituent microbes in a community. A nucleotide assembly-based strategy does not fare much better since metagenomic assemblies are typically very fragmented and also leave a large fraction of reads unassembled. We present a method for reconstructing complete protein sequences directly from NGS metagenomic data. Our framework is based on a novel Short... -
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Acronym for camera light sensor. A python program that calculates ambient brightness and sets screen's correct backlight using a camera.
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Batch Army
A simple MMORPG written in batch
Batch Army is an Open source MMORPG written in the windows batch scripting language. It's not the best now but with your help, we could make it kick ass. ------------------------------------------------------------- To potential developers: browse to files/Batch_Army-FOR_Devlopers Download the code, edit it and send me any feedback at jawandoyanju@gmail.com. main focus: *.Making the game faster *.Finding a good free ftp server that runs 24/7 *.developing the story... -
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Insulin IP Calc
Insulin infusion protocol calculator
A simple, point of care, clinic decision support system (CDSS) Android app for Insulin infusion and hyperglycemia management in the ICU. The infusion protocol calculator is based on the updated "Yale Insulin Infusion Protocol" http://bit.ly/1DaVfUd and American Association of Clinical Endocrinologists (AACE) blood sugar targets. http://inpatient.aace.com/ . Source code requires Xamarin Studio & Android SDK to compile. -
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rainbow
short reads clustering and local assembly
Efficient tool for clustering and assembling short reads, especially for RAD. -
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Redqueen is an UCI (Universal Chess Interface) only compatible chess engine written in C++.
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eSBMTools
python tools for enhanced native structure-based modeling
eSBMTools: python tools that assist the setup and evaluation of native structure-based simulations of proteins and nucleic acids, both at the Cα and all-atom level. The tools interface with GROMACS and support its standard output formats. Information from other sources like bioinformatics or experimental data can be added to the standard native structure-based model (SBM). Publication to be cited: Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, and Alexander Schug.... -
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mAPV
modified Asymmetric Pseudo-Voigt Model
A new peak detection algorithm for MALDI mass spectrometry data based on a modified Asymmetric Pseudo-Voigt model -
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mathCollection is a java package representing a consistent and efficient extension to the Java Collection Framework of JDK 1.4. It offers different kinds of sets with mathematical, non-destructive functions.
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LaTeX Track Changes
Collaborators on a version-controlled .tex file can track changes.
LaTeX Track Changes shows changes over time for a .tex file that has its history stored in a git or svn repository. The user can customize how to view the changes: limited to certain authors or by revision or date among other filters. An Emacs mode provides the user interface. Plug-ins for other editors (such as TeXShop) are planned. -
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Human AI Net
a Human and Artificial Intelligence Network
We are going to teach eachother how to build AI and new kinds of game objects in this network using intuitive dragAndDrop. Its going to be a space for experimenting with fun and useful tools in new ways. Version 0.8.0 has some advanced components that will be working soon. The plan is a massively multiplayer space where we design, evolve, and play with game objects and do AI research together which controls those game objects along with directly playing the games. The main data format is,... -
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Brain Workshop
Python implementation of the Dual N-Back mental exercise
Brain Workshop is a Python implementation of the Dual N-Back mental exercise. This exercise is the only mental activity that has been scientifically shown to improve your short-term memory (working memory) and fluid intelligence. -
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Architeuthis ist ein open source-Softwaresystem, das die Entwicklung verteilter Java-Programme unterstützt und den Rahmen für ihre Ausführung bereitstellt.
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dmodem
dmodem
High performance acoustic softmodem employing multi-carrier modulation (OFDM). Initial code is based on the Dream DRM receiver. -
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ESBTL (Easy Structural Biology Template Library) is a lightweight C++ library that allows the handling of PDB data and provides a data structure suitable for geometric analysis and advanced constructions.
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Sigma knowledge engineering system is an system for developing, viewing and debugging theories in first order logic. It works with Knowledge Interchange Format (KIF) and is optimized for the Suggested Upper Merged Ontology (SUMO) www.ontologyportal.org . Sigma has moved to github.com/ontologyportal/sigmakee
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PlaTec
Plate Tectonics simulator
PlaTec is a 2D terrain generator that uses a simplified model of plate tectonics to produce realistic heightmaps in real time. The simulator starts with a flat fractal map and splits it randomly into plates. Plates are moved around the map. If continents of two plates collide, they fold creating mountain belts. If oceanic crust of one plate collides with another plate, subduction occurs resulting in coastal mountain ranges or island chains. This project is part of my Bachelor of... -
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SpherePacking
Packing of spheres in a round cell
Packing spheres densely inside a larger sphere. The algorithm was described in details in this paper (2004) "Random close packing of spheres in a round cell" http://www.sciencedirect.com/science/article/pii/S0022309303007695 Dependency GNU scientific library
