Search Results for "reference" - Page 56
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Showing 2126 open source projects for "reference"
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Parallel processing bash script
Simple bash script to organize distributed calculations through SSH
It was used once to manage executions of single static binary file on several remote machines with different inputs and to yield outputs after. The script contains small reference and a few comments which can help to use it and to modify. -
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Clojure Cookbook
This is the home of O'Reilly's Clojure Cookbook
Clojure Cookbook is O'Reilly's editorial collection of Clojure “recipes” — curated pairs of common programming problems with idiomatic solutions, code examples, and explanations. It's designed to serve both as a tutorial and problem-solving reference in real-world Clojure development. Clojure Cookbook doesn't just teach you Clojure, it also shows you how to use the language and many of its common libraries. The most difficult part of mastering any language is knowing how to apply it, in an idiomatic way, to tasks that real software developers encounter every day. This is especially true of Clojure. ... -
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...The CUDA-miRanda implementation is a fast microRNA target identification algorithm that aligns short nucleotide sequences (i.e., < 32 nucleotides) against longer reference sequences (e.g., 20k nucleotides). It has the ability to report multiple alignments and the corresponding traceback sequences for any given query-reference pair with up to 166x speedup on 4 GPUs compared to regular CPUs.
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RegexTransformer
Create a list of regular expressions and execute them all on a text
Ever wanted to transform a lot of texts to another format? Having to execute a lot of regular expressions to convert one text, and repeating the process for every text. No more, by using RegexTransformer. You can create a list of regular expressions to be executed on a text of your choosing. -
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hl7-fhir
Open source FHIR reference implementation
Reference implementation of HL7 FHIR based persistence. Scope of the project 1) Auto-generate O/R mapping based on FHIR XSD - JPA handling of FHIR primitive data type - JPA handling of FHIR complex data type - Auto-generate the complete O/R mapping for all the resources based on FHIR XSD 2) Implement generic FHIR services to support both RESTful and Message/Document based service integration -
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evolp/r
Logic Program Updates System
EVOLP/R is a logic program updates system, implemented in XSB Prolog. Reference: A. Saptawijaya, L. M. Pereira, Incremental Tabling for Query-Driven Propagation of Logic Program Updates, in: K. McMillan, A. Middeldorp, A. Voronkov (eds.), Procs. Intl. Conf. on Logic for Programming Artificial Intelligence and Reasoning (LPAR-19), Springer LNCS ARCoSS series, December 15-19, Stellenbosch, South Africa, 2013. -
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NVSE Extender
Extended functions for the New Vegas Script Extender
NVSE plugin to add functionality including creating per-reference associative arrays, checking the skeleton in use by an actor, and so on. -
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DEFT
Density Estimation using Field Theory
Field-theoretic methods for estimating continuous probability distributions. Reference: Kinney (2013) "Estimation of probability densities using scale-free field theories" arXiv:1312.6661 [physics.data-an] (http://arxiv.org/abs/1312.6661) Current release: deft_v0.2 (see Files) -
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rodneyspr
Re-imagining of Heisermann's classic Self-Programming Robot
...The classic "Rodney" as described in David L. Heisermann's book "How to build your own self-programming robot", with the original Intel 8085 code. In all likelihood, this is for reference only. I don't expect many people are going to build it 2. An updated version, running on more modern hardware, but remaining true to the algorithms published in his book. The end result will be at least three sets of code, for the Alpha, Beta and Gamma versions of Rodney. We would also like to experiment with a "Delta" version which could use either bare RF or WiFi to exchange state data between machines. ... -
Atera all-in-one platform IT management software with AI agentsAtera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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CPoll based C++ server pages
Server side scripting language similar to ASP and PHP, but using C++.
...CPPSP project home page: http://xa.us.to/cppsp/index.cppsp Main development happens on github at: https://github.com/xaxaxa/workspace/ Documentation is currently being worked on, but there is a doxygen reference at: http://xa.us.to/cppsp/doxygen/html/classcppsp_1_1_page.html GCC 4.7 or above is required even for the binary release because .cppsp pages need to be compiled at runtime. CPPSP currently only supports linux (due to the use of epoll). -
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NovaRS - software for control GNSS station equipped with NovAtel receivers. Programm can generate on-the-fly hourly and daily RINEX 2.11 files according to IGS naming conventions.
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estMOI
estimating Multiplicity Of Infection using short read sequence data
...It is primarily developed to address the limitations of current laboratory (PCR) based estimates of multiplicity using high throughput sequence data as follows: INPUT files: estMOI requires a BAM (alignment output of short reads to the reference genome), VCF (a file with information on variant calls) and FASTA (reference genome) files. 1. Short reads are aligned to a reference genome using BWA, BOWTIE, SMALT or other short read aligners to generate a BAM file. 2. Single Nucleotide Polymorphysms (SNPs) are then identified using SAMTools in the VCF format. 3. The reference FASTA file is expected to be indexed using 'samtools faidx' to generate a *.fai file. ... -
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...It is easy to use, versatile, well documented, and fast. Bindings to more than 15 programming languages are available. An easy to read introduction article and a reference manual accompanies the library with examples and recommendations on how to use the library. Several graphical user interfaces are also available for the library.
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MLKit
Full-blown Standard ML Compiler
The MLKit is a full-blown compiler for the programming language Standard ML. The MLKit implements most of the Basis Library and has support for ML Basis Files. The compiler runs on the Linux platform and targets the x86 architecture. -
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Matlab Affine Registration
Matlab GUI for 2D Affine Image Registration
Matlab Affine Registration (MAR) is a landmark based registration GUI, developed for 2D registration. The user first loads a reference image and a floating image. The user then selects the number of fiducial markers (or landmarks) and places them on the floating and reference images. A "Find Centroid" button is included, which will locate all centroids in the image. After selecting the markers on both images, the user clicks "Register". The floating image has a transformation applied which will map it to the reference image. ... -
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SOAPindel2
SOAPindel2 focusing on calling indels from the next-generation p
Requirements SOAPindel2 needs two input data sources: The reference sequence file used to align the reads. It must be in Fasta format. The files with read-alignments. SOAPindel2 accepts only Indexed BAM formats as input. Users can use the tools/soap2sam.cc to convert SOAP format to SAM format and use samtools convert SAM to indexed BAM. SOAPindel2 can guess the library insert sizes by itself. -
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virHap
A Software package for Inferring the haplotype structure of a mixed vi
...The program aims to characterize and quantify the composition, the abundance and the evolutionary path of the underlying viral population within a given host by analyzing Next Generation Sequencing data. The program takes as input the collection of reads (or several collections of reads in case of many data samples) and the reference genome and it constructs the evolutionary tree exhibiting the species abundance profile and the list of haplotypes along with their prevalences. -
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UNR Platform
A reference implementation of UNR (Ubiquitous Network Robot) Platform.
A reference implementation of UNR (Ubiquitous Network Robot) Platform. A tutorial document (in Japanese) is available as: http://sourceforge.net/projects/unrpf/files/20131017-UNRPF-Tutorial.pdf -
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Faerie Queene Online v3.01
Spenser's The Faerie Queene: module adventure for Neverwinter Nights 2
...Requires Neverwinter Nights 2 - Download the .mod file and place it in the "modules" folder in the Neverwinter Nights 2 folder. You must open this from the game itself. For more information, be sure to download The Faerie Queene Online Reference Guide as well! -
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RaspyBox
A dropbox client for the raspberry pi
...Functionality: Upload Download Make directories Delete Navigate Shortcut keys (insert for upload, del for delete, navigate or download with enter key or double click) How to use it: Download the python dropbox sdk from here https://www.dropbox.com/developers/reference/sdk extract it and install it by executing sudo setup.py install -f Create a new application in your drobox developer page Give a name to the app and get the app key and secret key. Put them in the raspberryDropy.py Run ./raspberryDropy.py, type login and follow the instructions After you finish press ctrl+D to quit and execute the .... -
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gcr_convert
converts cosmic-ray files from GALPROP for viewing / plotting.
The GALPROP program (http://galprop.stanford.edu) computes cosmic-ray propagation in the Galaxy, in 2D or 3D. The ouput cosmic-ray distribution is in the form of FITS files which however are not convenient for viewing or plotting with the standard ftools program fv, since the files have 4 or 5 dimensional arrays (due to the momentum and species axes) while fv handles only 3 dimensional arrays. This program converts to fv-compatible FITS files, either from 2D to (R,z) or from 3D to (x,z) at... -
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Extropy's DevPaks
A collection of the DevPaks for Dev-C++ that I maintain.
A collection of the DevPaks for Dev-C++ that I maintain: zlib libpng GMP MPFR wxWidgets GNU C Library Reference Cpp_manpages FANN Expat PCRE libtiff libjpeg JBIG-KIT CONIO libprimesieve liblzma_xz_utils OpenSSL -
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Hungry Hero
Hungry Hero is an open source Flash game built on Starling Framework.
...The game demonstrates how to leverage Starling’s features to create smooth, hardware-accelerated 2D experiences while maintaining cross-device compatibility through Adobe AIR and Flash. It showcases core concepts such as handling textures, sprite sheets, parallax backgrounds, and collision detection, providing a clear reference for building interactive games. The project also integrates advanced techniques like object pooling for performance, bitmap fonts for efficient text rendering, and Starling’s particle system extension for visual effects. Though originally built with the iPad 1 and 2 in mind, it can be adapted to multiple devices by adjusting configuration files, emphasizing the principle of “one code, multi-screen.” -
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GENE-counter is a computational pipeline for analyzing RNA-Sequencing (RNA-Seq) data for differential gene expression of eukaryotes, prokaryotes, as well as organisms with no available genome reference sequence.
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TRAMS
TRAMS stands for "Tool for Rapid Annotation of Microbial SNPs".
TRAMS annotates SNPs between microbial genomes using a tab-delimited SNP file and a reference genome (EMBL or Genbank format).
