Search Results for "gnu science" - Page 55
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Showing 11014 open source projects for "gnu science"
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EigenMS is a normalization method implemented in R (and older version in Matlab) available as a set of two functions that should be used in a sequence. Please download EigenMS.zip file (latest version). Latest version uploaded in October 2017 has a bugfix for single treatment group normalization. Rescaling has been omitted from 2015. EigenMS utilizes SVD to detect bias trends in the data and eliminates them. EigenMS eliminates effects from known and unknown factors and can be...
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EFO
The Experimental Factor Ontology describing experimental variables
*** Please note this repository is now deprecated as of January 2018. All EFO development and source code has been moved to https://github.com/EBISPOT/efo *** The Experimental Factor Ontology (EFO) available from http://www.ebi.ac.uk/efo is an application focused ontology modeling the experimental factors in ArrayExpress and constructing mappings to multiple existing domain specific ontologies. To submit new terms, features or report bugs please submit a ticket at the following:... -
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relay_control
easy control for the masla relay devices
A nice and simple solution to control and test the masla.de relay devices. It provides a schematic or overview to easy switch relays on or off. The USB interface of the devices makes a connection easy. Written in python and use of pygtk and pyserial it can be used flexible on several platforms. And it's just a example to control the relay-devices to help you write your own program. -
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CUBiBit
Tool to search binary biclusters on CUDA-enabled GPUs
CUBiBit is a parallel tool to accelerate the search of biclusters on binary datasets using CUDA-enabled GPUs. This data mining procedure is especially useful for gene expression data. This tool receives as input a file with ARFF extension that contais the binary values of m attributes and n samples and returns a file with the biclustering information. It is able to exploit the parallel capabilities of manycore NVIDIA GPUS. It also makes use of C++11 multithreading support to accelerate one... -
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Hamilton Project is a software package concerning science and math in C++
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Covert Channels Evaluation Framework
Network steganography / covert channels evaluation tool
Encryption is not sufficient to secure communication because often the simple fact that communication exists is often enough to raise suspicion and take further actions. Covert channels aim to hide the very existence of communication by using means of communication not normally intended to be used. The Covert Channels Evaluation Framework (CCHEF) is a flexible software framework for empirically evaluating network steganography methods or covert channels in network protocols. CCHEF can be... -
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Accord.NET Framework
Scientific computing, machine learning and computer vision for .NET
The Accord.NET Framework provides machine learning, mathematics, statistics, computer vision, computer audition, and several scientific computing related methods and techniques to .NET. The project is compatible with the .NET Framework. NET Standard, .NET Core, and Mono. -
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The Wily DNA Editor
a tool to master DNA sequences, plasmids and restriction digests
The Wiley DNA Editor is a simple tool to handle DNA sequence information up to 100 kbp using java script in your browser window. The main idea is to install nothing but start cloning. Here we handle the development and the bug reports. The Wiley DNA Editor can be used from our homepage - or the files available in the download section. -
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RDML-Ninja is an editor for qPCR data. It is the reference implementation for the RDML data standard allowing to visualize, edit and reanalyze qPCR data.
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OpSim - Open Source Process Simulator
An open source process simulator
**19-OCT-2017 PROJECT MOVED TO GITHUB** OpSim is an open source Chemical Engineering Process Simulator with a user friendly drag-and-drop graphical user interface (GUI) and an underlying high performance simulation engine. -
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FARSA
Framework for Autonomous Robotics Simulation and Analysis
FARSA is a collection of integrated open-source object-oriented C++ libraries that allow to experiment with autonomous robots. It allow to simulate different robotic platforms (the iCub humanoid and the khepera, e-puck, and marxbot wheeled robots), design the sensory-motor system of the robot/s, design the environment in which the robot/s operate, design the robot neural controller, and adapt the free parameters of the robot. -
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UMLS::Query is an umbrella for projects that create measures of semantic similarity for the biomedical domain. Our current project is UMLS-Interface and UMLS-Similarity. Our JBI-2007 article was based on Semantic-Similarity and Snomed-Interface.
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XDSGUI
A GUI for xds, with viewing cbf, editing xds.inp etc.
xds-gui is a fork from xds-viewer, which aims on expanding it to a full graphical interface for xds. XDS stands for X-ray Detector Software for processing single-crystal monochromatic diffraction data. xds-viewer was originally developed by Michael Hoffer until 2008 under the GPL. xds-gui is now being developed by me, Wolfgang Brehm under administration of Kay Diederichs at the University of Konstanz under the GPL. -
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viewpix
A Landsat 8 scene viewer
Viewpix allows the user to load all eleven bands of a Landsat 8 Level 1 data set into memory concurrently. You can scroll and view each band at full resolution. Change bands instantly with a single key press. Band 8 is 15 meters resolution, all other bands are 30m resolution. A 30m resolution gray scale scene is generated by Viewpix and is presented as band 12. Each Landsat 8 scene is roughly 190 X 180 kilometers. Viewpix was originally written as a simple platform to test GPU... -
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Sturesy
Student Response System
PROJECT MOVED TO GITHUB! https://github.com/sturesy/ Sturesy is a java-based realtime response system for gathering votes from students during lectures. (Often called Audience Response System, Classroom Response System or simply Clicker) For Docents: Easy to use and works out of the box on every machine. Create your Questions prior to your lecture. Evaluate the voting during the lecture or in depth afterwards. For Developers: Plugins for third-party-hardware can be easily... -
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LMAP
Lightweight Multigene Analyses in PAML
Maldonado E, Almeida D, Escalona T, Khan I, Vasconcelos V and Antunes A (2016) LMAP: Lightweight Multigene Analyses in PAML. BMC Bioinformatics, 17:354. doi: https://doi.org/10.1186/s12859-016-1204-5 -
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RElt
calculates overlap, kinetic integrals for numerical atomic orbitals.
The efficient algorithm calculating the overlap and the kinetic integrals for the numerical atomic orbitals is implemented. The described algorithm exploits the properties of the prolate spheroidal coordinates. The overlap and the kinetic integrals in R^3 are reduced to the integrals over the rectangular domain in R^2, what substantially reduces the complexity of the problem. We prove that the integrand over the rectangular domain is continuous and does not have any slope singularities. For... -
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Semantic Assistants
Natural Language Processing (NLP) for the Masses
Semantic Assistants support users in content retrieval, analysis, and development, by offering context-sensitive NLP services directly integrated in standard desktop clients, like a word processor, and web information systems, like a wiki. -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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wxMaxima
Cross platform GUI for Maxima
wxMaxima is a cross-platform graphical front-end for the computer algebra system Maxima based on wxWidgets. It provides nice display of mathematical output and easy access to Maxima functions through menus and dialogs. This project has moved to github and can be reached at http://wxmaxima-developers.github.io/wxmaxima/ -
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HermeneutiX
Your graphical tool for Syntactic/Semantic Structure Analysis of texts
HermeneutiX is a tool for diagramming syntactic and semantic structures of complex (not necessarily foreign-language) texts (e.g. bible or other historical excerpts). HermeneutiX is now part of SciToS (the scientific tool set). Starting with version 2.0.0, HermeneutiX can be found on GitHub. Please check out the release summary: https://github.com/scientific-tool-set/scitos/releases For an introduction, check out this video: https://youtu.be/uQjewyG0Ad8 PS: To run a Java... -
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BioRec:Bird Census field data annotation
Recognizing biological data from a notebook.
This project helps to digitize field data for a certain Bird Census method. Namely, bird census based on personal inspection or small (~10 km^2) regions with recording birds' position and behaviour on paper. This project makes it easy to annotate such field data and to make this data available for statistical analysis. -
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The Helsinki Finite-State Transducer toolkit is intended for processing natural language morphologies. The toolkit is demonstrated by wide-coverage implementations of a number of languages of varying morphological complexity.
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nmr-nessy
NMR relaxation dispersion spectroscopy analysis software
NESSY is an open source software to analyse NMR relaxation dispersion data of either CPMG or R1p (R1rho) dispersion experiments. The graphical interface enables simple management of large experimental data sets and simple and automated analysis. NESSY automatically calculates effective transverse relaxation rate (R2eff) and performs model selection between different relaxation dispersion models.
