Search Results for "gnu science" - Page 52
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Showing 11014 open source projects for "gnu science"
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Descend
Program for drawing 3D surfaces from parametric equations
Descend is an open source program for drawing 3D surfaces from parametric equations. It uses a custom, very fast language called Misc to calculate the geometry. It also uses OpenGL to render scenes with high quality shaders. Website: https://descend.mimec.org/ -
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PyMathProg
An easy and flexible mathematical programming environment for Python.
PyMathProg is a Python reincarnation of AMPL and GNU MathProg modeling language, implemented in pure Python, connecting to GLPK via swiglpk. Create, optimize, report, change and re-optimize your model with Python, easily integrate database, plotting, etc. -
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TARQUIN
MRS/NMR analysis software
Analysis software for MRS/NMR data. Allows processing and fitting to be performed in a fully automatic workflow. -
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The Cogitant library is a set of C++ classes enabling to easily build applications based on the Conceptual Graph model.
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Construct2D
COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils
Construct2D is a grid generator designed to create 2D grids for CFD computations on airfoils. The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available in... -
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Batch File Artificial Intelligence
Chat bot and free roaming AI in batch
Included in this project is a simple chat bot, a battle AI, and a swarm based free roaming AI. -
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lr2rmats
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/ -
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DockoMatic is a GUI application that is intended to ease and automate the creation and management of AutoDock jobs for high throughput screening of ligand/receptor interactions.
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Object Oriented Distributed Systems
Simplified Architecture for Distributed Systems
OODVS is a Java framework which goal is to increase the Java runtime support for Object Oriented Distributed Virtual Systems providing local access to distributed resources via proxies. -
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Inelastica
Transport code and tools based on SIESTA and TranSIESTA (DFT-NEGF)
NOTE: The Inelastica project moved to https://github.com/tfrederiksen/inelastica/ in February 2018. Pre- and post-processing tools for SIESTA (DFT, quantum chemistry) and TranSIESTA (quantum transport): (1) Calculate phonon frequencies, e-ph couplings, and inelastic contributions to the conductance (IETS). (2) Access Hamiltonian etc from Python. Some code documentation and installation instructions are available at this mediawiki page: http://dipc.ehu.es/frederiksen/inelastica/index.php. -
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Capsim(r) C Text Mode Kernel(TMK),DSP and communication blocks, topologies, libraries and tools for the development of high performance block diagram digital signal processing and communications systems,built in interpreter for scripting.SystemC support.
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aXonica
An installation package for freeware bioimaging tools
Download link: https://www.dropbox.com/s/jelbrho05m7yg8y/NeuroX_v.1.0.zip?dl=0 For Instructions Manual see Download section. -
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ABC-SysBio implements likelihood free parameter inference and model selection in dynamical systems. It is designed to work with both stochastic and deterministic models written in Systems Biology Markup Language (SBML).
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SiBELia
Synteny Block ExpLoration tool
Sibelia: A comparative genomic tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. -
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KalypsoBASE is a Desktop-GIS built on Eclipse. It's focus lies on modelling gis data using GML Application-Schemata. Features contain generic dialogs based on GML, maps based on OGC's SLD, and other tools like a charting framework or API for timeseries
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Acoustic Research Tool (ART)
Acoustic Simulation Library for Frequency and Time Domain Simulations.
ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX... -
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Ycad is a library of CAD functions in Java. Currently only DXF is supported for reading, viewing and writing. The DXF drawing may be rendered to a Graphics object for printing or imaging.
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Morinus
Exquisite Astrology Software
Astrology software for all. -
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DualTranscriptDiscovery
Transcript-discovery approach for gene feature delimitation by RNA-seq
This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the... -
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Silent Mantis
Event recorder software for animal and human behaviour research.
Silent Mantis is a freely available, cross-platform event recorder software, which integrates the features of a video player, an image viewer and a spreadsheet editor. It can be used in animal or human behavioral research to manually record any animal or human bevavioral states or events from a video file. The results can be exported into text files for statistical evaluation purposes. SM was developed by Peter Szabo at the Institute of Biology of the University of Veterinary Medicine in... -
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TOFFEE-DataCenter
Linux Server and Data-Center WAN Optimization
TOFFEE-DataCenter is the new TOFFEE variant meant for Data-Center, Server, HPC, Load Balancing, Cluster/Cloud Computing and SDN deployments. With TOFFEE-DataCenter (and or TOFFEE), OEMs and other equipment vendors can make use of this platform/stack, integrate, port and build WAN Optimization devices/appliances on to their existing product range. Or build a dedicated WAN Optimization hardware product series via the same. -
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This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
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wxHexEditor is another Hex Editor, build because of there is no good hex editor for Linux system, specially for big files. It supports files up to 2^64 bytes. Written with C++/wxWidgets GUI libs and can be used with other OS'es such Windows, Mac OS
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The Project has reached end of life. Web based tracking tool for ILL (Interlibrary Loan). May be added as "link target" to any existing linkresolver or used as a standalone linkresolver in connection with an EZB-Account. Needs: Tomcat, MySQL, Java 8
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Deinputex
Convert a latex document using the input directive to a single file.
Convert a latex document using the input directive to a single file. Example of use: java -jar deinputex.jar -i manuscript.tex -o manuscript-single.tex --verbose
