Search Results for "mixture" - Page 5

It includes a various hidden Markov models: regression, logistic regression, hidden Markov models, and emission probability density of a mixture of multivariate Normal distributions. Also available at https://github.com/yonoklee/MRHMMs Work in progress (Jun 20, 2021 - )

...It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis.

MCTIMME is a nonparametric Bayesian computational framework for analyzing microbial time-series data.The current implementation is in Matlab.

As the technique of acquiring genome sequences advances, the storage and data transferring of large genome data are becoming important concerns for biomedical researchers. We propose a two pass genome compression algorithm, which highlights the synthesis of complementary contextual models and the introduction of logistic regression mixture method, to improve the compression performance. The proposed framework handles genome compression with and without reference seque- nces, and demonstrated performance advantage over the best existing algorithms. The proposed method without a reference led to bit rates of 1.720 and 1.838 bits per base for bacteria and yeast, which are approximately 3.7% and 2.6% better than the state-of-the-art algorithm. ...

...This functionality is supported by the game being written in Python 3, with its powerful support for including external code at run-time. The graphics will be a simple mixture of 2D raster and vector imagery with text-based menus, and the music will be highly reminiscent of the 80's 'chiptunes' that made up the soundtracks for games on the Amiga and Commodore 64.

GenoTan identifies inherited variation of microsatellite loci from short sequence reads using a discretized Gaussian mixture model combined with a rules-based approach.

The AK toolkit is another kit for building and use Hidden Markov Models (HMMs). Originally developed for handwritten text recognition (HTR) using Bernoulli HMMs, it also implements diagonal Gaussians and can be used for any other purpose.

Matlab plug-in for SPM allowing to obtain a threshold for cluster FDR - the method fits a Gamma-Gaussian mixture model to the SPM-T and finds the optimal threshold (crossing between noise and activation). Optionally write the thresholded maps.

KlustaKwik is an open-source C++ and Java program for automatic clustering of continuous data into a mixture of Gaussians. The program was originally developed for sorting of neuronal action potentials, but can be applied to any sort of data. NOTE (25/04/12): For those interested in trying the new masked version of KlustaKwik designed for large dense electrode array, download KlustaKwik3.0.1 in the maskedKlustaKwik folder. UPDATE (04/07/12): Bugs have been fixed in the new masked version of KlustaKwik. ...

MercuryBoard is a powerful message board system dedicated to raw speed with a mixture of features, ease of use, and ease of customization coupled with expandability, and diverse language services.

SNOMP (SNOMP is Not OpenMP) is a library for semi-shared memory parallelization.

Legible Assembler is my attempt to create an assembler that can turn Legible Assembly code into a linkable PE object file. Legible Assembly will use a mixture of AT&T and Intel styles, prepositions and carriage return line separators.

...I was a pretty bad programmer back then, so the code is sloppy. The next version will be better. Similar to a stream cipher, but rather than performing an exclusive OR on the input bytes and cipher, it performs a mixture of 'rolling' (see x86 instruction ROR) and bit NOT operations according to the key.

ESMERALDA is a development environment for statistical recognizers operating on sequential data (speech, handwriting, biological sequences). It supports continuous density Hidden Markov models, Markov chain (N-gramm) models, and Gaussian mixture models.

This project hosts tools used for analysis of Gaussian Mixture Distributions (GMDs) which are used for statistical signal processing. The tools are libraries for implementing GMD operations and programs used to analyze properties of GMDs.

The Python Mixture Package (PyMix) is a freely available Python library implementing algorithms and data structures for a wide variety of data mining applications with basic and extended mixture models

XML Document Validator is a Java implementation of CLiXML - Constraint Language in XML - that allows to express complex constraints about XML content using a mixture of first order logic and XPath.

BigBang/Horizon is a proteomics data analysis pipeline with focus on the shotgun LC/MSMS workflow.

ENIGMA is a free game and application development toolkit, utilizing GCC and a series of parsers to convert a high level, script-like language based on Game Maker's GML, into C++. The toolkit employs a mixture of both C++ and GML, accepting either.

A mixture of Java code, application and frameworks

FunMod is a mod focused on humor and fun. it is a mixture of the style of Half-Mind and SMOD. There will be many weapons and items, including things like nailguns and the H.A.C.K.S. equipment. We will hopefully complete this. -xiode

test *only* 1) nr3, Poisson distribution 2) mixture model

Flexible engine for Web based online multiplayer games. The games developed on top of it should be a mixture of real time and turn based strategy games nowhere found before.

This program will be a mixture between a PIM and a personal tracking software At the first step, Todolist, Calendar, Journal and Exercise Tracker will be implemented. More features will follow. It's aim is to stay up to date but to keep it simple.