Search Results for "hidden markov java" - Page 5

A perl pipeline for identifying differentially expressed genomic regions from transcript counting experiments. The pipeline first uses a Hidden Markov Model (HMM) to identify genomic regions based on the data from the experiment. During the sample counting step the pipeline removes reads which are suspected as being PCR duplicates. The differential expression analysis is currently performed using the DESeq package from Bioconductor.

A paint program where the canvas is the visual cortex of a simple kind of artificial intelligence. You paint with the mouse into its dreams and it responds by changing what you painted gradually. There will also be an API for using it with other programs as a general high-dimensional space. Each pixel's brightness is its own dimension. Bayesian nodes have exactly 3 childs because that is all thats needed to do NAND in a fuzzy way as Bayes' Rule which is NAND at certain extremes. NAND can be...

This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.

This package implements the phrased-based hidden semi-Markov model described: Jesús Andrés-Ferrer, Alfons Juan. A phrase-based hidden semi-Markov approach to machine translation. Procedings of European Association for Machine Translation (EAMT), 2009. pp. 168-175. This project depends on jaf_Utils: http://sourceforge.net/projects/jafutils/ Install it prior installation of jaf_MT.

ESMERALDA is a development environment for statistical recognizers operating on sequential data (speech, handwriting, biological sequences). It supports continuous density Hidden Markov models, Markov chain (N-gramm) models, and Gaussian mixture models.

Pamvotis is a Wireless LAN Simulator for all the current physical layer extentions of the IEEE 802.11 (IEEE 802.11 a/b/g) standard and for the IEEE 802.11e Draft for Quality of Service in WLANs.

iGoSyncDocs is a desktop application(Swing based) that offers an easy way to access and synchronize files to Google Docs across multiple computers. Rember that iGoSyncDocs running under jdk1.6. And Windows & Linux installer version is coming soon.

Used to monitor the kids while they are using the computers transparently by taking screen shots every configurable period and store them in specified location, it also support email or FTP upload according to configurations.

A hidden Markov model for haplotyping.

ProPHAnE: Proteomics result Pruning and Homology group Annotation Engine A perl script based workflow for annotation of protein data coming from the 'Mascot' (Matrix Science) and 'Scaffold' (Proteome Software) pipeline. Coming soon: Prophane 2, "a much improved and extended version of Prophane based on HTML5, PHP and MySQL. Most importantly, the pipeline includes now functional predictions on profile Hidden Markov models (HMMs), is fully-automated, and can be controlled via a highly...

Implementation of Hidden Markov Model for weka

Data mining tool for sequences (e.g. trajectories on a map, visited web pages, etc.) that creates a succinct description of the sequences, given a taxonomy (e.g. regions and sub-regions in the map, categories and sub-categories of pages, etc.).

EN: Free Sticky Note in java 1.6+ for Desktop; I T: Free Note per il tuo Desktop compatibile con java 1.6+; 3F Java Notes is a free and open source program that will allow to place lots of sticky notes on your desktop so that you will never forget about

A test project aiming to create a command-line interfaced virtual pet, with plants instead.

CThruView is an image viewer that allows mouse clicks to go through the image. Use it as tracing paper or splash screen. The image can be made semi-transparent, flipped, rotated, zoomed, always on top, clipped, moved, hidden and centered.

Hierarchical hidden Markov model for jointly analyzing ChIP-chip and ChIP-seq datasets.

Black scalpel is an advanced graphical (Swing gui) security and analysis tool written in Java, C and Assembler (platform independent). Current stage is early alpha, many features are still missing. Use SVN!

Backup application for general files and folders in java.

RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit against the evolutionary group that the HMM models, and it does this using through iterative database searches and incremental subsequent adaptation of the seed set.

Creates plain text directory listings from the context menu. Currently supports only Windows. Linux and Mac OS integration planned, although creating directory listings on these platforms is as simple as typing "ls -al". Basic filtering support inc

application that scans USB devices in order to find hidden and malicious code that might harm your computer

Igino Corona and Davide Ariu and Giorgio Giacinto, "HMM-Web: a framework for the detection of attacks against Web applications", IEEE ICC 2009. Anomaly detection of server-side web attacks based on Hidden Markov Models (unsupervised learning).

D-finder is a bioinformatic search algorithm for the identification of D-sites in JNK interacting proteins. The algorithm is a combination of pattern matching and a hidden markov model (HMM) based on a training set of known JNK D-sites.

This project intend to create a tool to reveal the secrets of the bible(bible), enabling to analyze verses for hidden messages using letters exchange and equidistant letter sequences (ELS).

AutoShare automatically synchronizes the contents of a directory with your friends using a secure peer-to-peer network whenever one of your friends is online at the same time. Especially useful for sharing photo albums with friends.