Search Results for "hidden markov java"
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Showing 13 open source projects for "hidden markov java"
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statsmodels
Statsmodels, statistical modeling and econometrics in Python
...The package is released under the open source Modified BSD (3-clause) license. Generalized linear models with support for all of the one-parameter exponential family distributions. Markov switching models (MSAR), also known as Hidden Markov Models (HMM). Vector autoregressive models, VAR and structural VAR. Vector error correction model, VECM. Robust linear models with support for several M-estimators. statsmodels supports specifying models using R-style formulas and pandas DataFrames. -
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Kaldi
kaldi-asr/kaldi is the official location of the Kaldi project
...It provides a powerful framework for building state-of-the-art automatic speech recognition (ASR) systems, with support for deep neural networks, Gaussian mixture models, hidden Markov models, and other advanced techniques. The toolkit is widely used in both academia and industry due to its flexibility, extensibility, and strong community support. Kaldi is designed for researchers who need a highly customizable environment to experiment with new algorithms, as well as for practitioners who want robust, production-ready ASR pipelines. ... -
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Introduction-NLP
Detailed notes on HanLP's new book, "Introduction to Natural Language"
...Later chapters cover part-of-speech tagging, named entity recognition, information extraction, text clustering, text classification, dependency parsing, and deep learning. Algorithms discussed include hidden Markov models, perceptrons, conditional random fields, Naive Bayes, and support vector machines. Many chapters link to executable code examples and datasets for hands-on study. The repository is designed to help learners organize the book’s key ideas into a practical reference for Chinese NLP work. -
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pomegranate
Fast, flexible and easy to use probabilistic modelling in Python
...But that's not all! Because each model is treated as a probability distribution, Bayesian networks can be dropped into a mixture just as easily as a normal distribution, and hidden Markov models can be dropped into Bayes classifiers to make a classifier over sequences. Together, these two design choices enable a flexibility not seen in any other probabilistic modeling package. -
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MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. * More info + downloads: https://mlpack.org * Git repo: https://github.com/mlpack/mlpack
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Lihang
Statistical learning methods (2nd edition) [Li Hang]
...The repository aims to help readers understand the theoretical foundations of machine learning algorithms through practical implementations and detailed explanations. It includes notebooks and scripts that demonstrate how key algorithms such as perceptrons, decision trees, logistic regression, support vector machines, and hidden Markov models work in practice. In addition to code examples, the project contains supplementary materials such as formula references, glossaries of technical terms, and documentation explaining mathematical notation used throughout the algorithms. The repository also provides links to related research papers and references that expand on the theoretical background presented in the book. -
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SnowyOwl
RNA-Seq based gene prediction pipeline for fungal genomes
SnowyOwl is a gene prediction pipeline that uses RNA-Seq data to train and provide hints for the generation of Hidden Markov Model (HMM)-based gene predictions, and to evaluate the resulting models. The pipeline has been validated and streamlined by comparing its predictions to manually curated gene models in three fungal genomes, and its results show substantial increases in sensitivity and selectivity over previous gene predictions. Sensitivity is gained by repeatedly running the HMM gene predictor Augustus with varied input parameters, and selectivity by choosing the models with best homology to known proteins and best agreement to the RNA-Seq data. ... -
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The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -pe TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -isize 200 -r 100 -pec (if control is PE) -ann -wig -seq –interfiles note: 1. ... -
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HMMLab
A Hidden Markov Model editor with support to HTK
HMMLab is a Hidden Markov Model editor oriented on HMMs for speach recognition. It can create, edit, train and visualize HMMs. HMMLab supports loading/saving HMMs from/to HTK files. -
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RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit against the evolutionary group that the HMM models, and it does this using through iterative database searches and incremental subsequent adaptation of the seed set.
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Igino Corona and Davide Ariu and Giorgio Giacinto, "HMM-Web: a framework for the detection of attacks against Web applications", IEEE ICC 2009. Anomaly detection of server-side web attacks based on Hidden Markov Models (unsupervised learning).
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SuperWillow is a Music Generation program. Artists have many influences which they have accumulated over the years by listening to countless pieces of music, this principle is reflected in SuperWillow.
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