Search Results for "reference" - Page 49
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Showing 2124 open source projects for "reference"
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Tcpwrapper Checker
A simple script that checks for tcpwrapper conformities
All of the executables attained from the PATH environmental variable will be checked to see if the reference the tcpwrapper library and hence allow tcpwrapper security setup. -
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libmng -THE reference library for reading, displaying, writing and examining Multiple-Image Network Graphics. MNG is the animation extension to the popular PNG image-format.
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eNterop
Drive International Standardisation for V2G
In the course of the project, automatable test suites shall be realized in software and hardware that help to ensure interoperability between such systems. On the other hand, a reference platform shall be defined and be publicly disclosed to help especially small and medium enterprises (SMEs) in accessing the market. The official eNterop Web-Page is http://www.enterop.net, there you can find more information about the project. The next upcoming public event will be the common conclusion show taking place at Siemens Forum Berlin, 3rd of December. -
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The cartesian programming language
A functional programming language
Cartesian is a pure functional programming language, wrapped in an imperative and object oriented layer. The main goal is to separate both worlds and to have some very clean and well defined interfaces. This project is the reference implementation of the language, as an interpreter. The interpreter's goal is not performance. -
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GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview
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2bRAD-GATK
THIS REPOSITORY HAS BEEN MOVED TO GITHUB
DOWNLOAD THE LATEST UPDATES FROM https://github.com/z0on/2bRAD_GATK 2bRAD is a method for cost-efficient whole-genome genotyping described in Wang et al 2012 http://www.nature.com/nmeth/journal/v9/n8/abs/nmeth.2023.html This project is about analyzing 2bRAD data using a genome reference (could be a species from the same genus). Scripts and walkthrough for: - trimming and quality filtering; - removing PCR duplicates; - mapping to genome reference; - realigning around indels; - base quality score recalibration; - calling variants; - variant quality score recalibration based on genotyping replicates; - smart-thinning and final filtering; - quality assessment based on replicates. ... -
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MPJ Express is an implementation of an MPI-like API—standardized by the Java Grande forum—used to write parallel Java applications, which can execute on a variety of parallel platforms ranging from multicore processors to compute clusters/clouds.
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SplitMEM
Graphical pan-genome analysis with suffix skips
With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. Here we introduce a novel O(n log n) time and space algorithm called splitMEM, that directly constructs the compressed de Bruijn graph for a pan-genome of total length n. To achieve this time complexity, we augment the suffix tree with suffix skips, a new construct that allows us to traverse several suffix links in constant time, and use them to efficiently decompose maximal exact matches (MEMs) during a suffix tree traversal. -
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Ampare PHP Encoder
Protect and Obfuscate Encode PHP File From reading ( Opensource )
Protect and Obfuscate Encode PHP File From reading ( Opensource ) Ampare PHP Encoder is a simple and easy to use PHP File Encoder which prevent newbies from reading it automatically. However , Advance and Intermediate able to find way to decode it. FAQ My script doesn't run or terminate Reference : http://php.net/manual/en/function.eval.php When Eval() function run an error code it will automatically terminate so the script doesn't run. Use it only 100% clean code. Please use PHP-Protect Script for better security too . by php protect it first and encode with our software so it second layer protection http://www.phpprotect.info/ I take my free time doing support. ... -
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Aspose Maven for JetBrains
Create a new IntelliJ maven based project for Aspose APIs.
Aspose Maven for JetBrains is another JetBrains Plugin released by Aspose pty ltd, for creating the Aspose Maven based projects. Aspose for JetBrains and Aspose Maven for JetBrains IDE plugins enables Java developers to work with various binary file formats. This plugin comes with Aspose Maven Project Wizard that creates Aspose Maven based project by selecting API(s) from Aspose Java product lines like Aspose.Cells for Java and Aspose.Words for Java etc. and add those selected Aspose... -
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tag-based RNA-seq
THIS REPOSITORY HAS BEEN MOVED TO GITHUB
...This project provides the scripts and walkthoughs for initial sequence data processing (from reads to gene counts), including: - concatenating raw sequence files according to the sampling design; - adaptor trimming, quality filtering and removal of PCR duplicates; - mapping against reference transcriptome; - deriving gene counts. -
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2bRAD-denovo
THIS REPOSITORY HAS BEEN MOVED TO GITHUB
Download the latest updates from https://github.com/z0on/2bRAD_denovo 2bRAD is a method for cost-efficient whole-genome genotyping, described in Wang et al 2012 http://www.nature.com/nmeth/journal/v9/n8/abs/nmeth.2023.html This project is about analyzing 2bRAD data without a genome reference. Scripts and walkthroughs for: - trimming and quality filtering; - removing PCR duplicates; - assembling loci; - calling variants (SNP-wise and haplotype-wise); - recalibrating quality scores based on genotyping replicates; - smart-thinning and final filtering; - quality assessment based on replicates. Also included are walkthroughs for analysis: - computing Weir and Cockerham Fst - BayeScan - ADMIXTURE - fastSTRUCTURE -
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fitGCP
Fitting genome coverage distributions with mixture models
...While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses. fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. ... -
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Aspose for NetBeans
Aspose - Your File Format Expert
Aspose for NetBeans project enables NetBeans IDE users to create a new NetBeans project through an Aspose Project Wizard. Through this wizard, developers can select and download the latest Aspose File Format Java libraries and samples of their choice. -
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Aspose for Eclipse
Eclipse plugin for Aspose File Format Java APIs
Aspose for Eclipse project enables Eclipse IDE users to create a new Eclipse project through an Aspose Project Wizard. Through this wizard, the developers can select and download the latest Aspose File Format Java libraries and samples of their choice. -
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RAREVATOR
Tool for the detection of variants in rare reference allele loci
RAREVATOR (RAre REference VAriant annotaTOR) is a tool for the identification and annotation of germline and somatic variants in rare reference allele loci from second generation sequencing data. RAREVATOR has been published on BMC Genomics. Magi A, D'Aurizio R, Palombo F, Cifola I, Tattini L, Semeraro R, Pippucci T, Giusti B, Romeo G, Abbate R, Gensini GF. -
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TE-locate
a tool for calling transposons
TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then. -
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...There is no DLL, if you need one you can always make one yourself, or you can include any files you need into your project code base directly. yamka uses CMake for build configuration, but you can use anything else that suits you, and still use CMakeLists.txt for reference. Have a look in the examples/ folder for sample programs.
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NinthTest JCA Provider
A security provider for the Java™ Cryptography Architecture
The NinthTest JCA Provider is a security provider for the Java™ Cryptography Architecture, focused on supporting candidate, reference, academic, and experimental cryptographic algorithms and security services. Because the services provided by the NinthTest JCA Provider are exploratory/provisional in nature, the NinthTest JCA Provider is not recommended for use in security-critical applications or environments. -
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MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-techniques and covers structures and reference spectra as well as biological roles, locations and concentrations.
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SequenceMatcher
Match query sequences against reference sequences
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Mori
ClojureScript's persistent data structures and supporting API
...All Mori maps and sets support all the non-mutating methods of the proposed ES6 Map and Set interfaces. The main difference with the spec is that key lookup is based on value not reference. keys, values, and entries methods return the proposed mutable iterators. -
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Awesome Android UI
A curated list of awesome Android UI/UX libraries
This repository is a curated collection of outstanding Android UI/UX libraries. It offers categorized links to components such as buttons, animations, layouts, and more, designed to help Android developers build rich interfaces. Broad coverage of UI/UX functionalities like parallax, dialogs, and calendars. Regularly updated and community-maintained. Encourages exploration of best-in-class UI components. -
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Facial Expression Recognition
Facial Expression Recognition System - Matlab source code
...The extracted feature vectors in the reduced space are used to train the supervised Neural Network classifier. This approach results extremely powerful because it does not require the detection of any reference point or node grid. The proposed method is fast and can be used for real-time applications. -
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turing machine simulation
turing machine simulation with gui
A turing machine simulation. With infinite tape, and finite states of instructions, finite symbols language. Full operational, complete. Coded with reference to http://en.wikipedia.org/wiki/Turing_machine. Have fun!
