Showing 2943 open source projects for "algorithm"

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  • 1

    HtmlTextExtractor

    HtmlTextExtractor is a utility to extract html articles From html pag

    HtmlTextExtractor is a utility to extract html articles From html pages it use a smart algorithm to find the articles in the page HtmlTextExtractor will remove everything except the articles Usage In the source folder type your folder directory which contains your Html files In the destination folder box type your output folder
    Downloads: 2 This Week
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  • 2
    ...In this work, we deal with inversion events, which occur when a segment of DNA sequence in the genome is reversed. In our model, each inversion costs the number of elements in the reversed segment. We present a new algorithm for this problem based on the metaheuristic called Greedy Randomized Adaptive Search Procedure (GRASP) that has been routinely used to find solutions for combinatorial optimization problems. In essence, we implemented an iterative process in which each iteration receives a feasible solution whose neighborhood is investigated. ...
    Downloads: 0 This Week
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  • 3
    Glycosylation Microviewer

    Glycosylation Microviewer

    An application create, simulate and adjust N-linked glycosylation.

    ...The model used in the application is based on two significant papers: 1.1997 Pablo Umana, James E.Bailey A Mathematical Model of N-linked Glycoform Biosynthesis. 2.2005 Frederick J.Krambeck, Michael J.Betenbaugh A Mathematical Model of N-linked Glycosylation. The application allow to simulate the network in dynamic form with various ODE solvers(Euler, Runge-Kutta etc). Genetic Algorithm is used to adjust the kinetic parameters of Michaelis-Menten equations in glycosylation reaction network. A dynamic plot is supplied to show the value of mole amout and mole fraction of various glycoform. Thanks to Alexey Balakin and Alessandro Presta. Alexey Balakin supply mathgl(https://sourceforge.net/projects/mathgl) that make the implementation of dynamic plot in this application easily. ...
    Downloads: 5 This Week
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  • 4
    ProClaT

    ProClaT

    Protein Classifier Tool

    ProClaT (Protein Classifier Tool) is a new bioinformatic machine learning approach for in silico protein classification. ProClaT uses the Multilayer Perceptron Neural Network (MLPNN) as the classifier algorithm, protein sequence to compose the features and protein conserved patterns to label the class.
    Downloads: 0 This Week
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  • 5

    HybridPSO

    HybridPSO algorithm integrated with weka

    Downloads: 0 This Week
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  • 6

    gBestPSO

    gBestPSO algorithm integrated with weka

    Downloads: 0 This Week
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  • 7

    AntMiner

    AntMiner algorithm integrated with weka

    Downloads: 0 This Week
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  • 8
    video encryption

    video encryption

    Light video encryption technique (source code)

    Light encryption algorithm (technique) that can be used in real time video encryption. (source code has been uploaded; You can read attached pdf file for more details about the presented encryption technique ! )
    Downloads: 0 This Week
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  • 9

    Single-Trial Feature Detection in ERPs

    Automatic detection of Even-Releated Potentials

    This algorithm automates the process of detecting N1, N2 and P2 features (peaks amplitude and latency) in ERPs. This is achived by a basic processing of the signal using Single-Trial EEG's derivative to find the possible peaks and then a fuzzy logic process to clasify them.
    Downloads: 0 This Week
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  • 10

    SplitMEM

    Graphical pan-genome analysis with suffix skips

    With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. Here we introduce a novel O(n log n) time and space algorithm called splitMEM, that directly constructs the compressed de Bruijn graph for a pan-genome of total length n. To achieve this time complexity, we augment the suffix tree with suffix skips, a new construct that allows us to traverse several suffix links in constant time, and use them to efficiently decompose maximal exact matches (MEMs) during a suffix tree traversal.
    Downloads: 1 This Week
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  • 11
    This tool is made to score machine translation performance with the TER metric. This code is based on Snover's algorithm.
    Downloads: 0 This Week
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  • 12

    gametes

    Generate complex SNP models and heterogeneous datasets

    Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model.
    Downloads: 18 This Week
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  • 13

    fitGCP

    Fitting genome coverage distributions with mixture models

    ...Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Please find the accompanying paper here: http://dx.doi.org/10.1093/bioinformatics/btt147
    Downloads: 1 This Week
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  • 14
    Downloads: 0 This Week
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  • 15

    chipexo

    model based analysis of ChIP-exo data

    ...MACExo has the following four steps: 1) sequencing data normalization and bias correction; 2) signal consolidation and noise reduction; 3) single nucleotide resolution border detection using Chebyshev Inequality; and 4) border matching using Gale-Shapley’s stable matching algorithm. When applied to yeast Reb1 and human CTCF ChIP-exo data, MACE is able to define TFBSs with higher sensitivity, specificity and spatial resolution, as evidenced by multiple criteria, such as motif enrichment, sequence conservation, nucleosome positioning, and open chromatin states.
    Downloads: 2 This Week
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  • 16
    Stemmer Gujarati

    Stemmer Gujarati

    Offline stemmer for Gujarati , which is one of 22 Indian languages.

    ...It relates morphological variant words to corresponding common root. For example "પ્રતિઉપયોગી" is word which has stem " ઉપયોગ". Stemmers are language specific tools. The design of a stemming algorithm requires a significant level of linguistic expertise. There has been lot of significant work in the development and evaluation of stemmer for non-Indian languages, but very less or no significant work has been done on Indian front especially for Gujarati language.The code of this stemmer is based on algorithm designed under guidance of Prof. ...
    Downloads: 0 This Week
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  • 17
    Diamond (DMD)

    Diamond (DMD)

    Diamond (DMD) is the digital wealth storage system.

    * 4.38 million total coins. * Cutting edge Grøstl algorithm. * Proof-of-Work block solving target time ~ 100 seconds. * Proof-of-Stake block solving target time ~ 100 seconds. * Very low transaction fee at 0.001. * Difficulty re-targets at every block. * Endless Hybrid Network Security. * Transaction Message technology. * Fast and secure transactions. * Provision for continuous promotion and development
    Downloads: 1 This Week
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  • 18

    STELLA Data Reduction Pipeline

    The STELLA Data-Reduction Pipeline for all kinds of Spectra

    ...If you use any of these programs to reduce data for a publication you must cite the paper "A Fast and Portable Reimplementation of Piskunov and Valenti's Optimal Extraction Algorithm with improved Cosmic Ray Removal and Optimal Sky Subtraction" by A. Ritter, E. A. Hyde, and Q. A. Parker, published in PASP 126, February 2014.
    Downloads: 4 This Week
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  • 19

    KWANSO

    MANAGING ROAD TRAFFIC CONGESTION VIA TRANSPORT TELEMATICS AND MOBILE

    The developed application is useful in overcoming congestion challenge in Ghana which is a major drawback leading to over consumption of fuel, deployment of many traffic supervisors. We utilized vehicular routing algorithms and techniques modeled from the study of packet traffic decongestion on computer data networks. Our modeled algorithm is executed over the generated routes using real time traffic data stored in an oracle database as the routing metric of computation. The application computes least congested route and presented to the user in two forms: • A directional map of the route • A list of nodes/junctions to traverse with journey details (estimated travel time, journey distance, fuel consumption, etc.) ...
    Downloads: 0 This Week
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  • 20
    Cyberphantom Alfa Colony
    This is an experimental project whose main objective is the creation of artificial intelligence (AI) new tipe. At the core of this idea is the use of special genetic algorithm that emulates the single-celled organism. The colony of such cybernetic organisms can give rise to a "reasonable" network that have a huge intellect and computing power.
    Downloads: 0 This Week
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  • 21
    Implementation of Kohonen 's algorithm for mapping colors randomly generated after the 3 basic components: red, green and blue in C#
    Downloads: 0 This Week
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  • 22
    diggit

    diggit

    R package for DIGGIT algorithm

    ...It requires large gene expression and genetic variants datasets and depends on context-specific regulatory networks including transcriptional interactomes (usually reverse engineered by the ARACNe algorithm) and post-translational interactomes (usually generated by the MINDy algorithm). Regulatory protein activity is inferred by the VIPER algorithm (available as an R package from bioconductor).
    Downloads: 0 This Week
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  • 23

    Facial Expression Recognition

    Facial Expression Recognition System - Matlab source code

    We propose an algorithm for facial expression recognition which can classify the given image into one of the seven basic facial expression categories (happiness, sadness, fear, surprise, anger, disgust and neutral). PCA is used for dimensionality reduction in input data while retaining those characteristics of the data set that contribute most to its variance, by keeping lower-order principal components and ignoring higher-order ones.
    Downloads: 0 This Week
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  • 24

    ezSIFT

    An easy-to-use standalone SIFT library written in C/C++

    *************************************************************************** Updated 06/28/2018 The ezSift project has moved to https://github.com/robertwgh/ezSIFT *************************************************************************** The SIFT (scale-invariant feature transform) algorithm is considered to be one of the most robust local feature detector and description methods. Most of the open-source SIFT implementations rely on some 3rd-party libraries. Some of them even rely on a few different large libraries. These dependencies make the installation, compilation and usage not easy. The ezSIFT library provides a standalone and lightweight SIFT implementation written in C/C++. ...
    Downloads: 4 This Week
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  • 25

    MITRE Common Layer 3

    Approach to choose MANET routing peers for existing protocols.

    Common Layer 3 presents an approach that allows an algorithm to choose IP routing peers intelligently among the nodes in a MANET but does not involve any modifications to existing IP routing protocols. In addition, our approach works as a pure interface between (any) MANET radio terminal and any IP router, so nodes using our interface interoperate with nodes that do not use this interface or with nodes using different algorithms to select routing peers.
    Downloads: 1 This Week
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