Search Results for "python 2" - Page 43
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Showing 3398 open source projects for "python 2"
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openSEQ
NGS compute distro proloaded with pipeline analysis software
...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify... -
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UniPyRange
Tool to fetch protein/DNA truncation constructs from Uniprot DB
Very simple python script which saves you the pains of counting the amino acids/DNA bases in fasta files from the Uniprot and NCBI RefSeq Database (1, 2). Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID -
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RenApp
The File Renamer App
This Program renames files of specified extension in a specified directory with a common name and appended numbering This Program also removes backup files from Specified directories and sub-directories. -
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ZFS Manager
ZFS Manager is a menu driven utility for managing ZFS Filesystems
ZFS Manager is a menu driven utility for managing ZFS Filesystems written in python. Features include: Creating/Deleting/Managing ZPOOLs Creating/Deleting/Managing Datasets Creating/Deleting/Managing Snapshots Creating/Removing ZILs/Cache Drives Managing ZFS Options (compression, NFS) Creating/Deleting/Managing ZFS Filesystems Future Features: ZFS Replication Requirements: Python 2.x, ZFS Filesystem Obligatory Warning: I am not responsible for lost/corrupted data due to the usage of this product. -
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CPIP is a C/C++ preprocessor implemented in Python. CPIP exposes all aspects of preprocessing for inspection. NOTE: This project has now moved to https://github.com/paulross/cpip. This is no reflection on Sourceforge, indeed I am very grateful for them hosting CPIP for may years. It is merely because I can't manage two workflows!
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Malware Analysis Network in Taiwan
MAN in Taiwan, MiT
Malware Analysis Network in Taiwan <Man in Taiwan, MiT> Welcome to contact us (TonTon@TWMAN.ORG) if you are interested in collaborating with us. This project is open source and distributed under the GNU General Public License version 3. Please feel free to add to or modify this source and propose changes or new converters. Developer & Copyrighted by : TonTon Hsien-De Huang Prompter: Jazz Yao-Tsung Wang, Figaro Chen-Ho Yang | Logo Desinger:Temaki Guo Community on... -
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This is a simple assistant written in Python language for video capture in HD definition, using HDPVR of Hauppage!.
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fPotencia
Power flow library in C++
fPotencia is the fruit of free time and passion for power systems simulation. After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base... -
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Python language bindings for the GtkExtra widget set. GtkExtra is a useful set of widgets for the GIMP Toolkit, aka GTK+. It provides a spreadsheet-like matrix widget and widgets for 2-D and 3-D graphing.
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kivy-rogues-of-lore-3d
Kivy 3D game
Kivy 3D game code. Released under GPL 2 and Python Foundation License 2.0 -
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larrythemagicaljourney
Fantasy Liesure Suit Larry game written in Kivy
GPL version 2 and Python Foundation License 2.0, ready to play on your phone with kivy launcher. Leisure Suit Larry is an old Sierra adventure game, the name Larry is clear I hope. -
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refracTag (discontinued)
Portable file-tagging utility coded in Python.
IMPORTANT: Refractag was later renamed to Inferact. Please use the latter for improved functionality. File-tagging for Windows and Linux. Terminal interface only, for now. -
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Music Merge Manager
Identify duplicate songs based on track metadata (ID3, etc)
Given two trees of audio files, examine the metadata for each file to try and determine the differences in the content of the trees. This helps find duplicate songs (or non-duplicated songs) even if the music is stored in different formats. Toggles let you determine how specific the matching criteria must be: Track number and song name? Artist, album, and track length? All of the above? Ultimately this program will let you delete duplicates from either the left or right trees, or copy... -
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A cross platform file and folder mass renamer, allows many different renaming operations in a GUI. Please note that development has moved to GitHub: https://github.com/metamorphose
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A database to support large history research projects. This is desktop application focuses on aiding individuals working on large projects like books and dissertations.
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MDcons(Molecular Dynamics consensus)
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD. -
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Aloof, Angband Ladder OpenOffice filter
OpenOffice.org extension to process data from the Angband Ladder site
It will allow to - keep local copy of data from http://angband.oook.cz/ladder.php - get data updates on user command - do reports, charts, saves to various formats etc, what office suites usually do -
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kDicts
kDicts is a simple app for anyone who loves to study foreign languages
kDicts is a simple app for anyone who loves to study foreign languages with a little bit of technology, or simply for anyone who needs to remember a few words. kDicts is written in Python and runs under Kivy framework. You can clone the repository to your /sdcard/kivy/kDicts or install it from APK. Before every update backup your app data! Like the app on facebook too: https://www.facebook.com/kDicts -
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Sun and Moon board game
digital version of the game sun and moon by Catspaw
The rules of the game can be found at Catspaws DeviantArt page https://www.deviantart.com/catspawdtp/art/Astral-game-rules-color-328109197 For updates and more screenshots visit our tumblr http://sunandmoononline.tumblr.com/ -
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Data logger, manipulator and visualizer. Receives data in CSV format from stdio.
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LWPR
Locally Weighted Projection Regression (LWPR)
Locally Weighted Projection Regression (LWPR) is a fully incremental, online algorithm for non-linear function approximation in high dimensional spaces, capable of handling redundant and irrelevant input dimensions. At its core, it uses locally linear models, spanned by a small number of univariate regressions in selected directions in input space. A locally weighted variant of Partial Least Squares (PLS) is employed for doing the dimensionality reduction. Please cite: [1] Sethu... -
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VozBox. Más que una centralita.
VozBox. Asterisk VoIP PBX.
VozBox es poder disponer de un Sistema de Comunicación Avanzado. Es poder llegar más lejos. Es poder convertir lo más sofisticado en lo más sencillo. Es poder contar con la más avanzada tecnología de comunicación, reduciendo sus gastos. Es una centralita VoIP Asterisk con altas prestaciones para las Empresas. Última versión disponible 2.11.19 en la web de VozBox: http://www.vozbox.es/descarga/ Internet connection required during installation. Update version: 2.11.19 1 -...
