Search Results for "genetic algorithm java" - Page 4
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Showing 908 open source projects for "genetic algorithm java"
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LoopMatcher
Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor... -
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Seshat Naming and Balancing Service
Extended COS Naming and Balancing Service
The Seshat Extended Naming and Balancing Service supplies a fully conformant COS Naming Service with extensions allowing you to store any serialized object in the naming tree. The Service also supplies a Balancer for session balancing multiple CORBA servants of the same type in balanced groups. The balanced groups can be bound to the naming tree. If you look up a balanced group you will transparently get a reference to an object in the group. The members of a group can be delivered either... -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through... -
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Flip card learning program for iPhone with a spaced learning algorithm. Create your own databases and edit the cards directly on the iPhone. Import Palm databases or csv-formatted files and backup your data with our Java application.
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jsprit
Open source toolkit for solving rich vehicle routing problems
jsprit is a java based, open-source toolkit for solving rich Traveling Salesman Problems(TSP) and Vehicle Routing Problems(VRP). It is lightweight, flexible and easy-to-use, and based on a single all-purpose meta-heuristic. Setting up the problem, defining additional constraints, modifying the algorithms and visualizing the discovered solutions is as easy and handy as reading classical VRP instances to benchmark your algorithm. -
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Simple Cipher Algorithm
Java Encryption Utility.
Very simple to use symmetric Java encryption utility. Please write a review. Email me with any questions or problems. -
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Skalli
IVS & ILRS Reference Point Determination
Skalli is a simple tool to estimate the IVS (International VLBI Service for Geodesy and Astrometry) and ILRS (International Laser Ranging Service) reference point of a radio or laser telescope. -
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uwindsortablut
Viking chess (tablut) game with CPU player
A full implementation of Tablut(aka Viking chess). Supports human vs human and human vs CPU games. Runs as Java Swing application (Java 8 Required). run the game from dist folder with java -jar tablut.jar Implemented By University of Windsor computer science students during Introduction to Artificial Intelligence course taught by Professor Kalyani Selvarajah. Please read the White Paper pdf for full game rules and description of CPU player artificial intelligence. ... -
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AES Everywhere
Cross Language AES 256 Encryption Library
AES Everywhere is Cross Language Encryption Library that provides the ability to encrypt and decrypt data using a single algorithm in different programming languages and on different platforms. This is an implementation of the AES algorithm, specifically CBC mode, with 256-bit key length and PKCS7 padding. It implements OpenSSL-compatible cryptography with randomly generated salt. -
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weka-MTreeClusterer
Flat clustering algorithm based on MTrees implemented for weka.
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IP-Chat
UDP based desktop chatting app which supports AES-256 bit encryption.
Simple Encrypted chat application built with Java. It uses AES-256 bit block cipher algorithm. -
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OIS Matching
Provides support for deduplicating patient data
Implements patient matching for immunization registries. Uses a weighted pre-defined decision network that is tuned using a genetic algorithm. -
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Javaluator
A java infix evaluator based on "Shunting Yard" algorithm.
Evaluate an arithmetic expression is as simple as: Double result = new DoubleEvaluator().evaluate("(e^3-1)*sin(pi/4)*ln(pi^2)"). But Javaluator provides you with much more ... Key features: - Functions support, including variable argument count. - Constants support: e, pi, etc ... - Variables support: Example sin(x) for x = pi/4. - Highly configurable: Reduce the built-in operator or function sets, define your own brackets. - Extensible: Define your own grammar, or extends the... -
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OpenDino
Open Source Java platform for Optimization, DoE, and Learning.
OpenDino is an open source Java platform for optimization, design of experiment and learning. It provides a graphical user interface (GUI) and a platform which simplifies integration of new algorithms as "Modules". Implemented Modules Evolutionary Algorithms: - CMA-ES - (1+1)-ES - Differential Evolution Deterministic optimization algorithm: - SIMPLEX Learning: - a simple Artificial Neural Net Optimization problems: - test functions - interface for executing other programs (solvers) - parallel execution of problems - distributed execution of problems via socket connection between computers Others: - data storage - data analyser and viewer -
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Xoptfoil
Airfoil optimization with Xfoil
Airfoil optimization using the highly-regarded Xfoil engine for aerodynamic calculations. Starting with a seed airfoil, Xoptfoil uses particle swarm, genetic algorithm and direct search methodologies to perturb the geometry and maximize performance. The user selects a number of operating points over which to optimize, desired constraints, and the optimizer does the rest. -
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The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function. Jenetics allows you to minimize or maximize the given fitness function without tweaking it. ...
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines... -
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Bucket Fill Algorithm
Simple Bucket Fill Demo
This is Simple java implementation of bucket fill algorithm .Copy the code and Run in Console or IDE. Draw your shapes and click in the middle to fill the shapes. Precombiled jar for Windows OS https://sourceforge.net/projects/bucket-fill/files/G_BucketFill.jar/download -
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sijinn
SImple Java Implementation of Neural Network
Alfa version - work in progress. Perseptron network structure. Can be saved in xml format. Training strategies: - Gradient Descent (Batch, Stochastic) - Genetic Breeding Training algorithms: - BPROP (back propagation) - QPROP (quick propagation) - RPROP (resilient propagation) - GENE (genetic neural) Demo: https://sijinn.herokuapp.com/ http://sijinn.appspot.com/network GitHub:... -
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EECluster
Tool for energy-efficient resource management in HPC clusters
EECluster is software tool for managing the energy-efficient allocation of the cluster resources. EECluster uses a Hybrid Genetic Fuzzy System as the decision-making mechanism that elicits part of its rule base dependent on the cluster workload scenario, delivering good compliance with the administrator preferences. In the latest version, we leverage a more sophisticated and exhaustive model that covers a wider range of environmental aspects and balances service quality and power... -
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Venice is a stock market trading programme that supports portfolio management, charting, technical analysis, paper trading and genetic programming. Venice runs in a graphical user interface with online help and has full documentation.
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TEESer
Tool for Engineering Emergent Selforganizing bEhavioR
...Designers can continue to use their domain tools such as favorable simulator and by pluging it into the framework can take advantage of distributed simulations in the grid, various analyzers, optimizers (particle swarm optimization, genetic algorithms, ...). See Wiki pages for more information. -
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Genetic Algorithm File Fitter, GAFFitter for short, is a tool based on a genetic algorithm (GA) that tries to fit a collection of items, such as files/directories, into as few as possible volumes of a specific size (e.g. CDs or DVDs).
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JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
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inGAP-family provides an efficient and effective framework to discover, filter and visualize DNA polymorphisms and structural variants from alignment of short reads. Applying this method on polymorphism detection on real datasets shows that elimination of artificial variants greatly facilitates the precise identification of meiotic recombination points, recognizing causal mutations in mutant genomes or QTL loci. In addition, inGAP-family provides user-friendly graphical interface for...
