Search Results for "synthetic" - Page 3
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Showing 147 open source projects for "synthetic"
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pySBOL
SWIG-Python wrappers for libSBOL
pySBOL is a SWIG-Python wrapper around libSBOL, a module for reading, writing, and constructing genetic designs according to the standardized specifications of the Synthetic Biology Open Language (SBOL). This page provides binary installers for Windows operating system for Python 2.7 and 3.6. For installation instructions, visit: https://pysbol2.readthedocs.io/en/latest/installation.html For full documentation, visit: https://pysbol2.readthedocs.io/en/latest/index.html -
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Sarsim2
Synthetic Aperture Radar Simulation
Synthetic Aperture Radar Simulation written in C and C++ by students at University of Cape Town (UCT). -
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libSBOL provides the core C/C++ interfaces and their implementation for the Synthetic Biology Open Language (SBOL). Version 2.1.1 of libSBOL provides an API to construct SBOL 2.1.0 designs and to read and write SBOL version 2.1.0 XML/RDF files.
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Genetic Oversampling Weka Plugin
A Weka Plugin that uses a Genetic Algorithm for Data Oversampling
Weka genetic algorithm filter plugin to generate synthetic instances. This Weka Plugin implementation uses a Genetic Algorithm to create new synthetic instances to solve the imbalanced dataset problem. See my master thesis available for download, for further details. -
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... Agents and Synthetic Characters Group) www.gaips.inesc-id.pt EMOTE: (Embodied Perceptive Tutors for Empathic Based Learning) www.emote-project.eu LIREC (LIving with Robots and Embodied Companions): www.lirec.eu
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libRoadRunner
high performance SBML JIT compiler & simulation engine
A high performance and portable simulation engine for systems and synthetic biology. -
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GetX
An automated mutation cassette design tool for scarless genome editing
We developed GetX, a stand-alone python script that allows the user to design mutation cassettes for scarless genome editing in bacteria using our previously described two-step recombination method. GetX allows the user to design synthetic DNA fragments required to perform bacterial genome editing with simple inputs of 1) genome information from the target strain and 2) information for the desired mutation. GetX designs DNA fragments for introduction of sequences for protein tagging, deletions... -
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OraMasking
Data masking tool for Oracle database
For Oracle database, mask sensitive data by replacement (static or expression), substitution (synthetic data set is included), random values (Lorum Ipsum) or deletion. Generates update/delete statements or triggers or runs directly against the database. -
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pair-trading-view
Pair Trading View - .NET application for visual analysis of synthetic
Pair Trading View - .NET application for visual analysis of synthetic financial instruments based on statistical models. https://github.com/dv-lebedev/pair-trading-view Look for binaries in "pair-trading-view\PairTradingView.WinFormsApp\bin\Debug" folder. -
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CloudMIG Xpress
Find the best suited cloud provider and deployment for your software
To reduce resource over and under-provisioning, software systems can be migrated to IaaS and PaaS-based cloud environments. However, aligning and optimizing existing software systems for a cloud computing foundation often involves substantial reengineering activities or at least an elaborated configuration during the migration. There exist various challenges that have to be addressed, for example, systematically comparing cloud environment candidates, checking the conformance with... -
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Test data generator
Random test data generator
It's a free portable win32 application to generate random test data, with support of only even or only odd numbers. It's easy to test your code on large amount of data. For test integers than 10000 it directly copies the test data to clipboard and for greater amount of data it creates a TXT file in d:\ path. -
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CloudGen is a new synthetic workload generator that allows the simulation of the network traffic created by cloud storage services in various realistic scenarios. More details can be found at: G. Gonçalves, I. Drago, A. B. Vieira, A. P. C. da Silva, J. M. de Almeida, and M. Mellia, “Workload Models and Performance Evaluation of Cloud Storage Services,” RT.DCC.003/2015, UFMG, Tech. Rep., 2015, http://homepages.dcc.ufmg.br/∼ggoncalves/techrpt/15003.pdf.
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SIGVerse
Simulator for Human-Robot Interaction, used in the RoboCup@Home
.... Therefore, we have been developing a simulator environment called SIGVerse, which is a simulator that combines dynamics, perception, and communication simulations for synthetic approaches to research into the genesis of social intelligence. In this paper, we introduce SIGVerse, its example application and perspectives. -
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HPC Challenge
HPC Challenge is an HPC benchmark for memory access patterns
HPC Challenge benchmark consists of 7 tests: (1) HPL - the Linpack TPP benchmark which measures the floating point rate of execution for solving a linear system of equations. (2) DGEMM - measures the floating point rate of execution of double precision real matrix-matrix multiplication. (3) STREAM - a simple synthetic benchmark program that measures sustainable memory bandwidth (in GB/s) and the corresponding computation rate for simple vector kernel. (4) PTRANS (parallel matrix transpose... -
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scFvMiner
Scripts for analysing NGS data
These scripts written in java can be used for deep sequencing analysis of the scFv antibodies from a synthetic antibody library and yields complete sequence information on the randomized areas of antibodies enriched from the library by phage display. The methods are descriped in Lövgen, J., Pursiheimo, J.P., Pyykkö, M., Salmi, J. & Lamminmäki, U. (2016) Next generation sequencing of all variable loops of synthetic single framework scFv – application in anti-HDL antibody selections. New... -
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TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
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This code uses a technique originally developed for facial recognition to describe shear stress distributions in open channel flow. In this approach, a synthetic database of images representing normalized shear stress distributions is formed from the training data set using recurrence plot analysis. A face recognition algorithm is then employed to synthesize the recurrence plots and transform the original database into short-dimension vectors containing similarity weights proportional...
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Ava: Testdata Xsl
generates Testdata on base of excel: creates xml,excel,csv,html,sql,+
this tool for test-data-generation receives an 'excel-sheet' as primary input. second important paramter is the 'number of test-records to produce'. The excel-data will be reused as long data is needed. This tool is hightly paramatrisazable by the use of 'xsl scripts'. data can be created, updated, modified and finally exported in a format of your choice Main Fuctions: (1) Generates Testdata (excel, xsl, xml) (2) Exports generated testdata in multiple formats (csv, excel, html,... -
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Astrophotography Lab
A collection of useful tools for astrophotographers
Astrophotography Lab (APLab) is a free program intended for anyone interested in astrophotography. It has two main purposes: - Interpreting data extracted from your astrophotos to produce useful information. - Using this information as a help for further improving your imaging results. The program consists of four main tools: an analyser tool, a calculator tool, a simulator tool and a plotting tool. The tools are connected, allowing you to transfer information between them, and easily... -
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toastpp Slab
Solve the diffuse optical tomography (DOT) problem in a slab geometry.
... and remove bad elements 3. Generate initial values 4a. Generate detector positions 4b. Generate source positions 5. Generate source-detector (QM) file 6a. Solve the forward solution in TOAST++ and compare to the analytical solution 6b. Generate the FEM file from synthetic data generated in 6a 7. Reconstruct mus and mua in the slab using TOAST++ 8. Plot solution tetgen: http://wias-berlin.de/software/tetgen/ This code is a starting point and can be expanded to complicated geometries. -
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MSP: a 3D flocking boids simulator
A highly flexible 3D flocking boids simulator, conceived as a tool for
.... The set of considered behaviors are inspired by the well-known approach introduced in 1987 by C. W. Reynolds. The simulator delivers a 3D visual interface and provides as an output file all the instantaneous microscopic information related to each boid (positions and velocities over time), allowing in this way subsequent analysis, such as searching for synthetic and higher-level descriptions of collective behaviors, relying for instance on global network and meta-structural properties. -
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RANGE: produce random genetic transcription networks in the NEMO language, which when compiled outputs models in Systems Biology Markup Language. Generate synthetic microarray data, or use NEMO alone to SBML-ize a network, or visualize it in cytoscape.
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MobiSim synthesizer is a software for generating a located synthetic population from aggregated census data. Authors : Gilles Vuidel, Jean-Philippe Antoni
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GemCAD
GemCad.com is a design software for faceted gems
GemCad is dedicated to computer-aided design software for faceted gemstones. Faceted gems are used in jewelry. Faceting is the craft of cutting flat, polished facets or faces on clear minerals, natural and synthetic, using a flat grinding disk called a lap. Faceting is a lapidary art. To facet, you need a faceting machine to hold the stone at a precise angle to the cutting lap. Faceting is a fun hobby. -
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MITSU
Stochastic EM for transcription factor binding site motif discovery
... an information-based heuristic known as MCOIN. In tests on realistic synthetic and previously characterised prokaryotic data, MITSU has been shown to outperform an EM-based algorithm and previous sEM-based implementations. MITSU is described in more detail in our paper: A. M. Kilpatrick, B. Ward & S. Aitken, Stochastic EM-based TFBS motif discovery with MITSU Bioinformatics, 30(12):i310-i318, 2014