Search Results for "cluster analysis" - Page 3
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Showing 87 open source projects for "cluster analysis"
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Matlab Community Detection Toolbox
CDTB is a MATLAB toolbox which performs Community Detection
We present the Community Detection Toolbox (CDTB), a MATLAB toolbox which can be used to perform community detection. The CDTB contains several functions from the following categories. 1. graph generators; 2. clustering algorithms; 2. cluster number selection functions; 4. clustering evaluation functions. Furthermore, CDTB is designed in a parametric manner so that the user can add his own functions and extensions. The CDTB can be used in at least three ways. The user can employ... -
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Epik Utilities
Epik Utilities are tools for Linux Administrators.
...Html, text, xml and sqlite3 database reports can be optionally generated to support both manual and automated fault analysis. The scan and merge process attempts to heuristically identify possible problems with the node or cluster configuration and highlights them in red to speed up the review and resolution process. -
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Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.
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RIO
Regularity Inspector for Ontologies
RIO is an open source project. It is a framework that uses cluster analysis for the detection of syntactic regularities in ontologies. The implementation of RIO is based on OWLAPI (http://owlapi.sourceforge.net). A standalone Java tool is used for computing regularities, which are then saved in an XML file. The RIO plugin for Protege 4 (http://protege.stanford.edu) can be used for loading and visualising the regularities in Protege ontology editor. -
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iBRAIN2 Workflow Manager
A system for automated analysis and data handling for RNAi screens
The iBRAIN2 software system for RNAi high-content screening integrates automated analysis and customizable data management. It enables robust and complex parallel processing on computer cluster infrastructure and allows for reliable storage of primary and resulting data sets. -
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IMPORTANT: The project moved over to github! You can find it at: https://github.com/exhuma/python-cluster
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RNA CoMPASS
RNA CoMPASS is a web-based GUI distributed computational pipeline.
RNA CoMPASS, a web-based GUI distributed computational pipeline, provides all-in-one functionality including human transcriptome quantification and the typical endogenous RNA-Sequencing analysis along with the investigation of exogenous sequences. RNA CoMPASS is deployable on either a local cluster or a grid environment managed by PBS submission. -
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WaveSorter
A powerful, versatile tool for offilne spike analysis and sorting
WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform... -
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AGNES Cluster identification
R script to run several clustering algorithms using morphometric data
The R script was written to perform and compare several versions of cluster algorithms as described in: Seifert, Ritz & Csősz (2013) published in Myrmecological News. The aim is to identify (cryptic) taxa based on numeric data on morphology. The first step is a Linear Discriminant Analysis (LDA) based on subunits (ant nests) independent of any taxon information. Following analysis are Non-Metric Multidimensional Scaling (NMDS) and k-Means clustering. -
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SpiKeDeteKt
An automatic spike detection program to be used with new KlustaKwik
This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs... -
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Clusterfit
Show stellar evolution and open clusters in a color-magnitude diagram
This program is centered on a graphical Hertzsprung-Russell or color-magnitude diagram (CMD). It can show animated evolutionary tracks of stars of different masses, for a single star or a population of stars. In addition, it can show the CMD of a large number of existing open clusters, based on scientific survey data, and overlay isochrones (the curve in a CMD from stars born at the same time) to determine the age, distance and interstellar reddening of the cluster. Determining these... -
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imDEV
Tools for multivariate data visualization, exploration and analysis.
You may also like some newer work: http://createdatasol.com/ Project imDEV is an application of RExcel, which seamlessly integrates Excel and R for tasks focused on multivariate data visualization, exploration, and analysis. Interactive modules for dimensional reduction (imPCA), prediction (imPLS), feature selection, analysis of correlation (imCorrelations) and generation of networked structures (imGraph) provide an integrated environment for systems level analysis of multivariate data. -
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QSAS plug-ins
Plug-ins for the space physics data analysis software QSAS.
The project is concerned with developing new plug-ins for the space plasma analysis software QSAS. The plug-ins are developed mainly for the Cluster II mission, Champ and Swarm. QSAS can be downloaded from: http://www.sp.ph.ic.ac.uk/csc-web/QSAS/ -
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is... -
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Mass Spectrometry analysis Pipeline
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Ocean Sync
Hadoop Management System
OceanSync is an Hadoop Management System that allows users to control a variety of aspects of Hadoop. This includes a Graphical User Interface that allows a user to perform HDFS maintenance tasks and submit new jobs to the cluster. The OceanSync product sits on top of any Hadoop Architecture. -
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PCL Analysis is a perl package that allows the user to perform common and useful manipulations on PCL formatted microarray datasets (the format used by the programs Treeview and Cluster)
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Scripts to... (1) format expression data from TCGA (Cancer Genome Atlas) for Cluster 3.0 & Java TreeView (heat mapping). (2) generate list of potential miRNA clinical biomarkers/signatures based on survival analysis (kaplan-meier curve) statistics.
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PHP web application that collects trend data from VMware vCenter database and displays reports. Even if you have multiple vCenter databases VM Reports can connect to all of them.
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PPIV is a parallel software application used in Particle Image Velocimetry (PIV) analysis. The software will compute the vector field for one image pair or multiple image pairs. PPIV can run on a single desktop machine or in a cluster environment.
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Integrated Capacity Planning Environment is a collection of program modules to support the analysis and modeling of enterprise grid/cluster systems.
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Clown is a "clustering" framework. It allows you to cluster datasets (in ARFF) format using a number of different clustering algorithms.
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Facelift is a visualization and analysis software for online social networking services. It displays a given community as a node-link diagram and provides several search / filtering functions as well as cluster analysis features.
