Search Results for "structural analysis" - Page 2
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Showing 106 open source projects for "structural analysis"
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QBlade
Wind Turbine Rotor Design and Simulation
QBlade 2.0 released!!!! QBlade 2.0 released!!!! QBlade 2.0 released!!!! This project page is discontinued, you find our new webpage at: https://qblade.org/ This project page wont be updated in the future, however, everything in the "Files" section and the Forum Content will remain avaliable to everyone... -
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DiPoly
Diffraction analysis of Polymers
DiPoly is a new software that implements basic diffraction methods for the structural characterization of biopolymers. It is freeware with a friendly interface for the analysis of experimental powder X-ray diffractograms of polymer samples of biomass of various origins. A complex approach approach based on a combination of the Segal, decomposition and LeBale methods is used to estimate the degree of crystallinity. -
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DockStream
A Docking Wrapper to Enhance De Novo Molecular Design
DockStream is a docking wrapper providing access to a collection of ligand embedders and docking backends. Docking execution and post hoc analysis can be automated via the benchmarking and analysis workflow. The flexilibity to specifiy a large variety of docking configurations allows tailored protocols for diverse end applications. DockStream can also parallelize docking across CPU cores, increasing throughput. DockStream is integrated with the de novo design platform, REINVENT, allowing one to incorporate docking into the generative process, thus providing the agent with 3D structural information. -
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Modal Plotter
Create Strain and Kinetic Energy Density maps from FEA
Create Strain and Kinetic Energy Density maps out of a Natural Frequency extraction analysis (i.e. modal analysis). Works with a variety of FEA results format: NASTRAN, ABAQUS, Ansys, Medina/Permas. -
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Colin
Civil Engineering structural analysis application.
Colin is a structural analysis application with a lightweight interface. This structural analysis software for students, in order to provide an easier way to learn the basics of civil engineering. -
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Davinci
Davinci is a DVsaaS (Data Visualization as a Service) Platform
Davinci is oriented towards product managers, business people, data engineers, data analysts, data scientists, etc. It aims to provide a one-stop data visualization solution, which could be both independently used as a public cloud/private cloud and integrated into third-party systems as plugin. A simple configuration on Davinci UI can meet multiple visualization requirements. It also supports other visualization features like advanced interaction, industry analysis, pattern searching,... -
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Estru3D
Structural analysis using the Stiffness Matrix method
Program for structural analisys using the Stiffness Matrix Method. It has its own graphical interface and full GUI. Now beign translated to english. It is developed in Gambas3 basic only. -
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Frontend Regression Validator (FRED)
Visual regression tool used to compare baseline and updated instances
...FRED is responsible for automatic visual regression testing, with the purpose of ensuring that functionality is not broken by comparing a current(baseline) and an updated version of a website. The visual analysis computes the Normalized Mean Squared error and the Structural Similarity Index on the screenshots of the baseline and updated sites, while the visual AI looks at layout and content changes independently by applying image segmentation Machine Learning techniques to recognize high-level text and image visual structures. This reduces the impact of dynamic content yielding false positives. ... -
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VRmol
Virtual reality system to explore macromolecular structure
We leverage the most cutting-edge computational technologies to develop a virtual reality (VR) system - VRmol - that provides the visualization and analysis of macromolecule structures in an infinite virtual environment on the web. VRmol is natively built with WebVR technology, providing all structural analysis functions in a fully immersive, inspiring virtual environment. It is convenient to use, runs on the internet, and requires no software downloading and installation. And by connecting to a number of cloud-based genomic and drug databases, it provides an integrative platform to perform advanced structural and translational research. ... -
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MYSTRAN
General Purpose Finite Element Structural Analysis Fortran Program
Files for end users are now controlled at http://www.mystran.com MYSTRAN is a general purpose finite element analysis computer program for structures that can be modeled as linear (i.e. displacements, forces and stresses proportional to applied load). MYSTRAN is an acronym for “My Structural Analysis”, to indicate it’s usefulness in solving a wide variety of finite element analysis problems on a personal computer. For anyone familiar with the popular NASTRAN computer program developed by NASA (National Aeronautics and Space Administration) in the 1970’s and popularized in several commercial versions since, the input to MYSTRAN will look quite familiar. ... -
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2D Structural Analysis
Determine the bending moments, shear forces, axial forces and displace
2D Structural Analysis in Python by Ritchie Vink A collection examples of 2D Finite Element Analysis (FEA) made with Jupyter Notebook Lab - https://jupyter.org/ To install Jupyter - https://jupyter.org/install ===== App is available on Play Store -> https://play.google.com/store/apps/details?id=com.ulm.struct If you want to download a python editor for your android smartphone follow this link -> https://play.google.com/store/apps/details? -
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Sensitizer
A toolset to automate STOP analysis with Zemax OpticStudio
SENSITIZER is an ESO software toolset written in Matlab and Mathematica aiming at automating some Structural/Thermal/Optical Performance (STOP) sensitivity analyses with Zemax OpticStudio (ZOS). The core code of SENSITIZER runs in MATLAB and drives ZOS in the background through the ZOS-API interface, based on .NET. The output is saved in the MATLAB file format and can be post-processed using MATLAB and/or Mathematica routines. The optical system to analyze is defined in a normal Zemax lens... -
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inGAP-family provides an efficient and effective framework to discover, filter and visualize DNA polymorphisms and structural variants from alignment of short reads. Applying this method on polymorphism detection on real datasets shows that elimination of artificial variants greatly facilitates the precise identification of meiotic recombination points, recognizing causal mutations in mutant genomes or QTL loci. In addition, inGAP-family provides user-friendly graphical interface for...
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BioNet-Finder
Network-based modeling and analysis for complex biological data
BioNet-Finder is a network-based genomic data modeling project, supported by the Multivariate Statistics lab of the Brain and Behavioural Science Department at University of Pavia (Pavia, Italy), to share data, methods, and code for network-based analysis of complex disorders. Our goal is to provide straightforward tools for data reduction, modeling, and interpretation, avoiding common issues, including data selection, database compositional biases, topological/hierarchical organization of data, genomic complexity, latent effects on the observed system, and output ranking. This is carried out applying network analysis methods from different fields, such as Structural Equation Modeling (SEM), together with data reduction algorithms (e.g., random walkers, spectral analysis, shortest path-based or topology-based algorithms). ... -
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I.S.A.A.C.S. Interactive Structure Analysis of Amorphous and Crystalline Systems is a cross-platform software developed to analyze the structural characteristics of three-dimensional models built by computer simulations.
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BioPPSy
A biochemical property prediction system
...Assembles a set of tools and databases for predicting the physical properties of small molecules. The program models a given property's dependence on a collection of molecular and structural descriptors using a training set of molecules. Neural networks and support vector regression are available, as well as linear models. The models generated by this analysis can then be used to predict the properties of compounds during the development of new and novel drugs. The program and its databases are all open-source. -
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BPPS-SIPRIS
sequence/structural analysis programs
A suite of statistically-based programs for inferring joint sequence-structural determinants of protein functional specificity written in C/C++ within a linux environment. -
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The structural analysis library is a C/C++ portable software library for analyzing the structural properties of stoichiometric networks
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Indeterminate Beam Analysis Program
Calculates SF, BM, Slope and Deflection.
IBAP is a structural beam analysis software that can be used by Civil, Mechanical and Structural Engineers, Beam designers and Engineering students for both professional and academic purposes. -
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MS2Browser
LC-MS/MS data browser designed for siderophore analysis
MS2Browser is a tool for interactive pre-processing, analysis and visualization of LC-MS/MS data. Input is an mzXML file with centroided LC-MS/MS data. The program is written in MatLab and it was designed for the analysis of siderophores (iron transporting small molecules) in bacterial media. Some of the functionality and use of MS2Browser is described as part as an open-access book chapter: http://www.intechopen.com/books/applications-from-engineering-with-matlab-concepts/small-molecule-lc-ms-ms-fragmentation-data-analysis-and-application-to-siderophore-identification A siderophore structural database assembled for this project can be found alongside the MS2Browser software (.cfw format to be used with ChemBioFinder(TM) ). ... -
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Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
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beam3d
3d beam FEM structural analysis
3D FEM structural analysis using the beam element. It works with macro preprocessor and system pipes. -
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GRASPER
Repetitive structural variation caller using short paired-end reads
WE HAVE MOVED TO A GIT REPO. Please go to https://github.com/COL-IU/GRASPER GRASPER (Genome Rearrangement Analysis using Short Paired-End Reads) is a de novo structural variation (SV) calling software that is capable of detecting repetitive SVs. It constructs A-Bruijn graphs to capture approximate repeats within a reference genome then SVs are detected on the graphs. GRASPER requires a reference genome sequence in a FASTA formatted file along with a Illumina paired-end sequencing data of a sample genome. -
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CoGA
R package for differential co-expression analysis
CoGA (Co-expression Graph Analyzer) is an R package to identify differentially co-expressed gene sets between two phenotypes. The software infers gene regulatory networks from gene expression data, and compares structural properties of the inferred networks based on their spectrum distributions. It also compares the networks in terms of their gene centralities, clustering coefficients and shortest path lengths. In addition to the differential co-expression analyses, the tool provides graphical interfaces for network visualization, ranking of genes according to their "importance" in the network, and the standard single gene differential expression analysis. -
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Copy Number Explorer
Interactive Copy Number Analysis for Cancer Genomics
Deployed online at: https://arraycgh.shinyapps.io/Copy_Number_Explorer/ https://arraycgh.shinyapps.io/Copy_Number_Explorer_Survival/ Copy Number Explorer is a data mining tool for cancer researchers interested in the structural and copy number changes. Huge volumes of genomics data from nearly every cancer type are now freely available and several online databases have begun to collate and store this information. However, current tools focus on individual gene queries rather than...
