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Showing 103 open source projects for "ct"
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DoseInHumanBody
Patient dose from medical X-ray and other sources
DHPRE software uses Geant4 simulation toolkit for computing organ doses, effective dose and lifetime atributable cancer risk for humans exposed to external radiation field. It is mainly used for patients undergoing X-ray examinations such as radiography, mammography, dental panoramic and CT but can be used for any kind of radiations. INTERFACE is a small program to compute the correction to dosimeter reading when used in conditions other than the calibration ones. This package does... -
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magiccube3
Magic cube visualisation and play
With the MagicCube program you can visualize the movements of a magic cube in 3D. You can command movements in the usual notation interactively and load sequences of movements. You can store the state of the actual cube and the performed movements. You can also randomly disturb the cube and reset or solve it. The cube can be in three modes (for Rubiks and CT mode see references in readme!): 0 = the classic, Rubiks mode with colours, 1 = the CT mode with characters... -
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This program is developed for measurement of semi-automatic quantification of muscle and fat on the abdominal CT. If you draw the peritoneal line on the CT image, you can easily and fast obtain the abdominal circumference, the area of abdominal muscles, the area of subcutaneous fat and visceral fat. This program requires the installation of MATLAB compiler (MATLAB Complier (R2014a) Runtime 8.3) before running the program (BMI_CT_ver6.exe). You can download the complier program from...
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PyVE
PyVE is image analysis and visualization environment
PyVE is image analysis and Visualization Environment focused at clinical use. At the core of it there is a powerful viewer for displaying 3D datasets (MRI, PET, CT) based on VTK. It all comes precompiled allowing painless access to Python (2.x), the ITK toolkit for image analysis, numpy/scipy for numerical calculations, Qt and PyQt4 for the development Graphical User Interfaces. It is what you need for fast prototyping and development of more complex projects. -
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Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, Composight is a collection of small and simple apps that have already been successfully used...
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OPEN SEN PLATFORM
OPEN PLATFORM FOR SEN APPS (subproject of Computer as Therapy)
.... Such developed app then works as the add-on of this framework tool. Here we also present sources of initial set of SEN apps: - Yes/No app: simple app for AAC (alt. comm.), - Daily Planner: simple planner app - SoundTherapy: app for music therapy - GestureTranslator: app for hand gesture language translation - & more . These apps also stand as a demo add-on apps for framework tool described above and show how simply each SEN app is manageable by i-CT Framework tool. See our BLOG tab too. -
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3DimViewer
3DimViewer is a lightweight 3D viewer of medical DICOM datasets.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn). -
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CT-Finder
A Web Service for CRISPR Optimal Target Prediction and Visualization
CT-Finder is a web service that allows a user to upload DNA sequences, set specifications according to experimental goals, and receive candidate guide RNA targets. Optimal candidates are suggested through consideration of predicted off-target effects. A visualization of on-target and off-target matches against the chosen reference genome is provided in JBrowse. [1] Who are we? Please visit our website http://bioinfolab.miamioh.edu [2] How to cite CT-Finder? Zhu, H. et al. CT-Finder... -
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cphcttoolbox
Cph CT Toolbox is a selection of Computed Tomography tools
Copenhagen Computed Tomography Toolbox is a collection of applications and libraries for flexible and efficient CT reconstruction. The toolbox apps generally take a set of projections (X-ray intensity measurements) and filter and back project them in order to recreate the image or volume that the projections represent. The project includes both mostly informative CPU implementations and highly efficient GPU implementations. Regular releases are hosted at the Python Package Index. -
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Control Techniques Software
CT Soft is software designed to be used with Control Techniques Drives
CTSoft can be used for configuring the following drives: Digitax ST Base Digitax ST Indexer Digitax ST Plus Digitax ST EZMotion FXMP25 Field Controller Mentor MP Unidrive 'Classic' in open-loop, closed-loop vector and servo modes Unidrive SP open-loop, closed-loop vector servo modes and regen mode Commander SK drives Commander GP20 Drive in open-loop, closed-loop vector Unidrive ES open-loop, closed-loop vector and servo modes Unidrive PV CTSoft system requirements: Pentium... -
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CT collimation measurements using CR plates. Please reference Bjarnason TA, Yang CY. CT radiation profile width measurement using CR raw data. Journal of Applied Clinical Medical Physics. 2015;16:501-507. Available from: http://www.jacmp.org/index.php/jacmp/article/view/5512
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NGS-TOOLBOX
Handy tools to process/analyze next generation sequencing (NGS) data
... purposes you can cite the following methods paper: Rosenkranz D, Han CT, Roovers EF, Zischler H, Ketting RF. Piwi proteins and piRNAs in mammalian oocytes and early embryos: From sample to sequence. Genomics Data 2015 5:309-313. -
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pyQPCR is a GUI application written in python that deals with quantitative PCR (QPCR) raw data. Using quantification cycle values extracted from QPCR instruments, it uses a proven and universally applicable model to give finalized quantification resu
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TTV
Tensor total variation for low-dose CT perfusion
We have developed a robust and efficient framework to accurately estimate the perfusion parameters at low radiation dosage. Specifically, we present a tensor total-variation (TTV) technique which fuses the spatial correlation of the vascular structure and the temporal continuation of the blood signal flow. An efficient algorithm is proposed to find the solution with fast convergence and reduced computational complexity. -
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DAT_Analyzer
striatal subregional analysis tool for dopamine transporter PET
DAT_Analyzer (DANA) is fully automated tool for analyzing dopamine transporter PET. DANA utilizes coregistration and spatial normalization functions in SPM8 and therefore requires MATLAB 7.1 (or higher) and SPM8 in 64bit environment with more than 8 GB RAM. MAC OSX OS is recommended. It includes various custom templates for conventional MR, DARTEL MR, two type of CT, and ligand specific PET and also includes various types of striatal subregional VOI templates. It supports five types of spatial... -
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Microsoft Windows and Apple OS X application to visualize various types of image data, including hyperspectral images, 3D models, and 3D CT medical images.
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IQWorks is a project to provide Medical Physicists with automated image analysis software for use with DICOM test images, such as CT, mammography and digital radiography.
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SBION2
Analyses of Salt Bridges from Multiple Structure Files, Version 2
Program: SBION2- Analyses of Salt Bridges from Multiple Structure Files, Version:--v2.0 - improved version of SBION: Gupta et al Bioinformation, 10, 164-166, 2014 Author:c)--Parth Sarthi Sen Gupta, Arnab Nayek, Shyamashree Banerjee, Pratyay Seth, Vishma Pratap Sur, Sunit Das,Chittran Roy and Amal Kumar Bandyopadhyay; Department of Biotechnology,The University of Burdwan, India -
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Quant-CT
Micro-CT image stack segmentation and quantification
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shutisstor
Windows Shutdown utility tool
Shutisstor is a simple , elegant and powerful windows utility tool to handle all the shutdown options in your own specified time . Simply it is a shutdown timer with improved and simple GUI. It does not have any complex options and it safe a safe to use freeware with out any junk advertisements It is 100% safe to use , you can find it from the "Virus free badge" given to this software at the top. As this is a freeware , you can distribute it to any one , but any ct of re-compiling... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited... -
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DRAMMS
A Deformable Medical Image Registration Toolbox
DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain... -
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The Apelon DTS (Distributed Terminology System) is an integrated set of open source components that provides comprehensive terminology services in distributed application environments.