Search Results for "crf matlab image" - Page 2
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Showing 131 open source projects for "crf matlab image"
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QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
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This project contains an open-source implementation of an OPT platform. The 3D-printable components are provided to built your customized sample stage. We offer our open source MATLAB software with an GUI for OPT imaging. We developed a generalized automated workflow including a two-step registration approach for correcting the center of rotation and provide accurate and high-quality 3D reconstruction. *Here we provide the raw tomography videos recorded using the zOPT hardware...
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TauFactor
MatLab App for calculating the tortuosity factor of microstructure
Please contact the author at sjc08@ic.ac.uk for any questions or if you wish to cite this application in a academic study. Journal paper available here: http://www.sciencedirect.com/science/article/pii/S2352711016300280 TauFactor is a MatLab application for efficiently calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. The tortuosity factor quantifies the apparent decrease in diffusive... -
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High Accuracy Approx Adder for FPGAs
Approximate Adder for FPGA-based Image Processing Applications
Using Approximate Computing, we have designed an innovative approximate adder with real-world image processing applications. The uploaded project includes its Matlab and Verilog models for result reproduction. This is an ongoing study and we aim to formally publish it for better understanding of viewers. -
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TracTrac
Massive Object Tracking Software (Matlab/Python)
TracTrac is a Particle Tracking Velocimetry (PTV) software which is extremely fast (more than 10k points tracked per second, 100k under python) and accurate (up to 0.01 pixel resolution), forming thus a good concurrent to the state-of-the art PIV/PTV algorithms. It allows to track anything that moves: birds, ants, grains, water flows... It runs on Python (v2&3) or Matlab (>2012a with Image Processing toolbox). Give it a try ! Get the last sources on GitHub: https://github.com/jorishey1234... -
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DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. A fast binary level-set based algorithm is implemented... -
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SigPack
SigPack - A signal processing library using Armadillo
SigPack is a C++ signal processing library using the Armadillo library as a base. The API will be familiar for those who has used IT++ and Octave/Matlab. -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
... for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE... -
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Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
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Qu is a MATLAB toolbox for the visualization and analysis of N-dimensional datasets targeted to the field of biomedical imaging. It supports several microscopy image formats and offers a plugin mechanism and a consistent API for easy extension.
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The automatic quantification of foci on fluorescent images of cells after DNA damage is widely used for estimation of the DNA double-strand break number in DNA of single cells. We present a graphical user interface FoCo, which was developed in Matlab together with ImageJ for individual foci count using image analysis.
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UmUTracker
A MATLAB program for 2D particle tracking or 3D DHM based tracking.
We present a versatile and fast MATLAB program (UmUTracker) that automatically detects and tracks particles by analyzing long video sequences acquired by either light microscopy or digital holography microscopy (DHM). Our program finds the 2D particle center position using an isosceles triangle transform and the axial position by a fast implementation of Rayleigh-Sommerfeld numerical reconstruction algorithm using a one dimensional radial intensity profile. *Updates v1.1: 2017/11/21- Bug... -
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This program is developed for measurement of semi-automatic quantification of muscle and fat on the abdominal CT. If you draw the peritoneal line on the CT image, you can easily and fast obtain the abdominal circumference, the area of abdominal muscles, the area of subcutaneous fat and visceral fat. This program requires the installation of MATLAB compiler (MATLAB Complier (R2014a) Runtime 8.3) before running the program (BMI_CT_ver6.exe). You can download the complier program from...
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Capsule Cell Tracker
A user-friendly GUI for cell tracking and force estimation.
This is a program with GUI for 2D image detection and tracking. In present work we develop an interpolation formula for drag forces on capsule shaped cells near walls that can be used as a simple and accurate substitute for the complex computational fluid dynamic simulations otherwise required to determine fluid-cell interactions. Please refer to our home page or contact us for more information http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics... -
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Tool for Single Image Fog Removal
Visibility improvement through single image defogging
Single image fog removal is used for visibility improvement. It removes fog and conserves details while maintaining color quality of an image. It can be used to restored the weather degraded images due to fog. MATLAB functions are individually incorporated for each stage of fog removal like airlight estimation and transmission estimation. -
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Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
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Scilab Image Processing Toolbox
Advanced image processing toolbox for Scilab on Unix/Linux/Mac OS
SIP is the image processing and computer vision package for SciLab, a free Matlab-like programming environment. SIP reads/writes images in formats like JPEG, PNG, and BMP. It does filtering, segmentation, edge detection, morphology, and shape analysis. Download from Git http://siptoolbox.sourceforge.net/devel -
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MatQuantify
An image processing tool
MatQuantify, written in MATLAB, detects both large-scale and subtle structural changes in the spindle or DNA and can be used to statistically compare the effects of different treatments. MatQuantify can quantify various physical properties extracted from fluorescence microscopy images, such as area, lengths of various components, perimeter, eccentricity, fractal dimension, satellite objects and orientation. It can also measure textual properties including entropy, intensities and the standard... -
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TESTIMAGES
Testing images for scientific purposes
The TESTIMAGES archive is a huge and free collection of sample images designed for analysis and quality assessment of different kinds of displays and image processing techniques. The archive includes more than 2 million images originally acquired and divided in three different categories: SAMPLING and SAMPLING_PATTERNS (aimed at testing resampling algorithms), COLOR (aimed at testing color rendering on different displays) and PATTERNS (aimed at testing the rendering of standard geometrical... -
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Low-power approximate adders provide basic building blocks for approximate computing hardware that have shown remarkable energy efficiency for error-resilient applications (like image/video processing, computer vision, etc.), especially for battery-driven portable systems. In this paper, we present a novel scalable, fast yet accurate analytical method to evaluate the output error probability of multi-bit low power adders for a predetermined probability of input bits. Our method recursively...
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This package includes a collection of MATLAB files which are designed to: 1. Given a calibration scan of the image of a point emitter with an engineered point spread function (PSF), 2. Perform a phase retrieval algorithm based on maximum likelihood estimation (MLE) of a phase aberration term which is added to the theoretical pupil function of the imaging system. 3. Use the phase-retrieved pupil function to perform single-emitter localization. Accompanying publication available here...
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MicroMos
To automatically obtain mosaics of partially overlapping images.
MicroMos is an open-source software tool written in MATLAB (The MathWorks, Inc., Massachusetts, USA), for automatically obtaining mosaics of partially overlapped images, also manually acquired. It was designed for stitching microscopy images, but thanks to the many parameters available it works also for other types of images. For more details, please, read: a) F. Piccinini, M. Pierini, E. Lucarelli, A. Bevilacqua, Semi-quantitative monitoring of confluence of adherent mesenchymal stromal... -
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging... -
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MATLAB code to identify specific colors of your choice in an image, using MATLAB. Visit letsrobo.wordpress.com for detailed working of the code.